Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
CDX2Q99626 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC25.7■■□□□ 1.7
CDX2Q99626 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CDX2Q99626 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
CDX2Q99626 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.7■■□□□ 1.7
CDX2Q99626 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.7■■□□□ 1.7
CDX2Q99626 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC25.7■■□□□ 1.7
CDX2Q99626 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
CDX2Q99626 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CDX2Q99626 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
CDX2Q99626 AL136967.2-201ENST00000623968 743 ntBASIC25.69■■□□□ 1.7
CDX2Q99626 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CDX2Q99626 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.68■■□□□ 1.7
CDX2Q99626 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
CDX2Q99626 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.68■■□□□ 1.7
CDX2Q99626 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CDX2Q99626 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CDX2Q99626 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CDX2Q99626 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CDX2Q99626 AC024257.2-201ENST00000549699 147 ntBASIC25.67■■□□□ 1.7
CDX2Q99626 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CDX2Q99626 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.66■■□□□ 1.7
CDX2Q99626 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
CDX2Q99626 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.66■■□□□ 1.7
CDX2Q99626 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CDX2Q99626 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CDX2Q99626 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CDX2Q99626 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDX2Q99626 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.65■■□□□ 1.7
CDX2Q99626 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDX2Q99626 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.65■■□□□ 1.7
CDX2Q99626 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC25.65■■□□□ 1.7
CDX2Q99626 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CDX2Q99626 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDX2Q99626 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CDX2Q99626 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC25.64■■□□□ 1.7
CDX2Q99626 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CDX2Q99626 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.64■■□□□ 1.7
CDX2Q99626 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
CDX2Q99626 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.64■■□□□ 1.7
CDX2Q99626 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.64■■□□□ 1.7
CDX2Q99626 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CDX2Q99626 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDX2Q99626 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.63■■□□□ 1.69
CDX2Q99626 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.63■■□□□ 1.69
CDX2Q99626 AF213884.3-201ENST00000563833 479 ntBASIC25.63■■□□□ 1.69
CDX2Q99626 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDX2Q99626 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
CDX2Q99626 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDX2Q99626 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CDX2Q99626 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.62■■□□□ 1.69
CDX2Q99626 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CDX2Q99626 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CDX2Q99626 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CDX2Q99626 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.61■■□□□ 1.69
CDX2Q99626 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.6■■□□□ 1.69
CDX2Q99626 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.6■■□□□ 1.69
CDX2Q99626 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.6■■□□□ 1.69
CDX2Q99626 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CDX2Q99626 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
CDX2Q99626 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CDX2Q99626 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CDX2Q99626 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CDX2Q99626 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CDX2Q99626 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.59■■□□□ 1.69
CDX2Q99626 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC25.59■■□□□ 1.69
CDX2Q99626 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CDX2Q99626 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CDX2Q99626 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.58■■□□□ 1.69
CDX2Q99626 AP002414.2-202ENST00000590929 1450 ntBASIC25.58■■□□□ 1.69
CDX2Q99626 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
CDX2Q99626 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
CDX2Q99626 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
CDX2Q99626 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDX2Q99626 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.57■■□□□ 1.68
CDX2Q99626 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.57■■□□□ 1.68
CDX2Q99626 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDX2Q99626 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.57■■□□□ 1.68
CDX2Q99626 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDX2Q99626 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.57■■□□□ 1.68
CDX2Q99626 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CDX2Q99626 MIR939-201ENST00000401314 82 ntBASIC25.56■■□□□ 1.68
CDX2Q99626 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.56■■□□□ 1.68
CDX2Q99626 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.56■■□□□ 1.68
CDX2Q99626 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CDX2Q99626 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
CDX2Q99626 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CDX2Q99626 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
CDX2Q99626 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
CDX2Q99626 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CDX2Q99626 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
CDX2Q99626 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
CDX2Q99626 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.55■■□□□ 1.68
CDX2Q99626 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.55■■□□□ 1.68
CDX2Q99626 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.55■■□□□ 1.68
CDX2Q99626 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CDX2Q99626 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.54■■□□□ 1.68
CDX2Q99626 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
CDX2Q99626 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
CDX2Q99626 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms