Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN3Q8NCR9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLRN3Q8NCR9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
CLRN3Q8NCR9 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CLRN3Q8NCR9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLRN3Q8NCR9 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
CLRN3Q8NCR9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLRN3Q8NCR9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.06■□□□□ 0.64
CLRN3Q8NCR9 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLRN3Q8NCR9 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN3Q8NCR9 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN3Q8NCR9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN3Q8NCR9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CLRN3Q8NCR9 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN3Q8NCR9 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN3Q8NCR9 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN3Q8NCR9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN3Q8NCR9 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19.04■□□□□ 0.64
CLRN3Q8NCR9 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN3Q8NCR9 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN3Q8NCR9 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN3Q8NCR9 AC137767.1-201ENST00000602918 1920 ntBASIC19.02■□□□□ 0.64
CLRN3Q8NCR9 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CLRN3Q8NCR9 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.02■□□□□ 0.64
CLRN3Q8NCR9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.02■□□□□ 0.64
CLRN3Q8NCR9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN3Q8NCR9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.02■□□□□ 0.64
CLRN3Q8NCR9 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLRN3Q8NCR9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.01■□□□□ 0.63
CLRN3Q8NCR9 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN3Q8NCR9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN3Q8NCR9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CLRN3Q8NCR9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN3Q8NCR9 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN3Q8NCR9 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
CLRN3Q8NCR9 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLRN3Q8NCR9 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLRN3Q8NCR9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
CLRN3Q8NCR9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLRN3Q8NCR9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19■□□□□ 0.63
CLRN3Q8NCR9 AC010501.1-201ENST00000606270 1962 ntBASIC19■□□□□ 0.63
CLRN3Q8NCR9 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLRN3Q8NCR9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CLRN3Q8NCR9 AC007375.3-201ENST00000600936 2314 ntBASIC19■□□□□ 0.63
CLRN3Q8NCR9 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19■□□□□ 0.63
CLRN3Q8NCR9 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 AC096887.2-201ENST00000623443 1957 ntBASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN3Q8NCR9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN3Q8NCR9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CLRN3Q8NCR9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN3Q8NCR9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLRN3Q8NCR9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.98■□□□□ 0.63
CLRN3Q8NCR9 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CLRN3Q8NCR9 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
CLRN3Q8NCR9 PKD1P6-201ENST00000343738 4769 ntBASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLRN3Q8NCR9 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 WHAMMP2-203ENST00000563942 1603 ntBASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CLRN3Q8NCR9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC18.95■□□□□ 0.62
CLRN3Q8NCR9 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLRN3Q8NCR9 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms