Protein–RNA interactions for Protein: Q8IWL2

SFTPA1, Pulmonary surfactant-associated protein A1, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFTPA1Q8IWL2 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SFTPA1Q8IWL2 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC24.44■■□□□ 1.5
SFTPA1Q8IWL2 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SFTPA1Q8IWL2 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SFTPA1Q8IWL2 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SFTPA1Q8IWL2 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SFTPA1Q8IWL2 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.43■■□□□ 1.5
SFTPA1Q8IWL2 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC24.43■■□□□ 1.5
SFTPA1Q8IWL2 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SFTPA1Q8IWL2 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SFTPA1Q8IWL2 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SFTPA1Q8IWL2 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SFTPA1Q8IWL2 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC24.42■■□□□ 1.5
SFTPA1Q8IWL2 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SFTPA1Q8IWL2 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SFTPA1Q8IWL2 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
SFTPA1Q8IWL2 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SFTPA1Q8IWL2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
SFTPA1Q8IWL2 KRT18P10-201ENST00000388836 1287 ntBASIC24.41■■□□□ 1.5
SFTPA1Q8IWL2 AC022616.5-201ENST00000518796 181 ntBASIC24.41■■□□□ 1.5
SFTPA1Q8IWL2 AC120024.1-201ENST00000562672 995 ntBASIC24.41■■□□□ 1.5
SFTPA1Q8IWL2 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SFTPA1Q8IWL2 MIR4787-201ENST00000607364 84 ntBASIC24.41■■□□□ 1.5
SFTPA1Q8IWL2 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.41■■□□□ 1.5
SFTPA1Q8IWL2 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 KRT18P24-201ENST00000344739 1156 ntBASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.4■■□□□ 1.5
SFTPA1Q8IWL2 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
SFTPA1Q8IWL2 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
SFTPA1Q8IWL2 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
SFTPA1Q8IWL2 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC24.39■■□□□ 1.49
SFTPA1Q8IWL2 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.39■■□□□ 1.49
SFTPA1Q8IWL2 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SFTPA1Q8IWL2 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC24.38■■□□□ 1.49
SFTPA1Q8IWL2 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.38■■□□□ 1.49
SFTPA1Q8IWL2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SFTPA1Q8IWL2 UNC93B8-201ENST00000511903 705 ntBASIC24.38■■□□□ 1.49
SFTPA1Q8IWL2 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SFTPA1Q8IWL2 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SFTPA1Q8IWL2 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SFTPA1Q8IWL2 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
SFTPA1Q8IWL2 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
SFTPA1Q8IWL2 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC24.37■■□□□ 1.49
SFTPA1Q8IWL2 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SFTPA1Q8IWL2 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.36■■□□□ 1.49
SFTPA1Q8IWL2 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SFTPA1Q8IWL2 BX664725.1-201ENST00000438252 379 ntBASIC24.36■■□□□ 1.49
SFTPA1Q8IWL2 KRT125P-201ENST00000546827 989 ntBASIC24.36■■□□□ 1.49
SFTPA1Q8IWL2 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
SFTPA1Q8IWL2 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SFTPA1Q8IWL2 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.36■■□□□ 1.49
SFTPA1Q8IWL2 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
SFTPA1Q8IWL2 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
SFTPA1Q8IWL2 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SFTPA1Q8IWL2 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
SFTPA1Q8IWL2 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
SFTPA1Q8IWL2 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
SFTPA1Q8IWL2 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SFTPA1Q8IWL2 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.34■■□□□ 1.49
SFTPA1Q8IWL2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SFTPA1Q8IWL2 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
SFTPA1Q8IWL2 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC24.33■■□□□ 1.49
SFTPA1Q8IWL2 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.33■■□□□ 1.49
SFTPA1Q8IWL2 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SFTPA1Q8IWL2 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SFTPA1Q8IWL2 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SFTPA1Q8IWL2 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC24.33■■□□□ 1.49
SFTPA1Q8IWL2 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
SFTPA1Q8IWL2 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.33■■□□□ 1.48
SFTPA1Q8IWL2 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SFTPA1Q8IWL2 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.32■■□□□ 1.48
SFTPA1Q8IWL2 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.32■■□□□ 1.48
SFTPA1Q8IWL2 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.32■■□□□ 1.48
SFTPA1Q8IWL2 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
SFTPA1Q8IWL2 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.32■■□□□ 1.48
SFTPA1Q8IWL2 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SFTPA1Q8IWL2 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SFTPA1Q8IWL2 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SFTPA1Q8IWL2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SFTPA1Q8IWL2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.31■■□□□ 1.48
SFTPA1Q8IWL2 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.31■■□□□ 1.48
SFTPA1Q8IWL2 AC137630.3-201ENST00000607245 391 ntBASIC24.31■■□□□ 1.48
SFTPA1Q8IWL2 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SFTPA1Q8IWL2 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.3■■□□□ 1.48
SFTPA1Q8IWL2 TSPY9P-201ENST00000440215 945 ntBASIC24.3■■□□□ 1.48
SFTPA1Q8IWL2 TSPY11P-201ENST00000442607 1045 ntBASIC24.3■■□□□ 1.48
SFTPA1Q8IWL2 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.3■■□□□ 1.48
SFTPA1Q8IWL2 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.3■■□□□ 1.48
SFTPA1Q8IWL2 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms