Protein–RNA interactions for Protein: Q7Z7F7

MRPL55, 39S ribosomal protein L55, mitochondrial, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55Q7Z7F7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MRPL55Q7Z7F7 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MRPL55Q7Z7F7 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MRPL55Q7Z7F7 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MRPL55Q7Z7F7 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MRPL55Q7Z7F7 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC15.23■□□□□ 0.03
MRPL55Q7Z7F7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MRPL55Q7Z7F7 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
MRPL55Q7Z7F7 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC15.21■□□□□ 0.03
MRPL55Q7Z7F7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MRPL55Q7Z7F7 TPT1-202ENST00000379055 948 ntTSL 2 BASIC15.21■□□□□ 0.03
MRPL55Q7Z7F7 PVT1-219ENST00000523427 938 ntTSL 3 BASIC15.21■□□□□ 0.03
MRPL55Q7Z7F7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MRPL55Q7Z7F7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MRPL55Q7Z7F7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MRPL55Q7Z7F7 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
MRPL55Q7Z7F7 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
MRPL55Q7Z7F7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MRPL55Q7Z7F7 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 AC142381.3-201ENST00000568208 1670 ntBASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MRPL55Q7Z7F7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 MIR639-201ENST00000384974 98 ntBASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 AC060814.1-201ENST00000554326 538 ntBASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 MIR3960-201ENST00000583311 91 ntBASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MRPL55Q7Z7F7 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 PFN2-211ENST00000489155 636 ntTSL 4 BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
MRPL55Q7Z7F7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 AL157400.5-201ENST00000507624 621 ntBASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 REST-210ENST00000638187 1334 ntTSL 5 BASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 AC022211.4-201ENST00000625094 2161 ntBASIC15.17■□□□□ 0.02
MRPL55Q7Z7F7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
MRPL55Q7Z7F7 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MRPL55Q7Z7F7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MRPL55Q7Z7F7 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MRPL55Q7Z7F7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
MRPL55Q7Z7F7 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MRPL55Q7Z7F7 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MRPL55Q7Z7F7 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms