Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USF3Q68DE3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.57■□□□□ 0.88
USF3Q68DE3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF3Q68DE3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF3Q68DE3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF3Q68DE3 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.56■□□□□ 0.88
USF3Q68DE3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.56■□□□□ 0.88
USF3Q68DE3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
USF3Q68DE3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USF3Q68DE3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF3Q68DE3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF3Q68DE3 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF3Q68DE3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF3Q68DE3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.55■□□□□ 0.88
USF3Q68DE3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USF3Q68DE3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.55■□□□□ 0.88
USF3Q68DE3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.55■□□□□ 0.88
USF3Q68DE3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF3Q68DE3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USF3Q68DE3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USF3Q68DE3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.54■□□□□ 0.88
USF3Q68DE3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.54■□□□□ 0.88
USF3Q68DE3 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.54■□□□□ 0.88
USF3Q68DE3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USF3Q68DE3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.54■□□□□ 0.88
USF3Q68DE3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.54■□□□□ 0.88
USF3Q68DE3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.53■□□□□ 0.88
USF3Q68DE3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USF3Q68DE3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.53■□□□□ 0.88
USF3Q68DE3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USF3Q68DE3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF3Q68DE3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF3Q68DE3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.53■□□□□ 0.88
USF3Q68DE3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
USF3Q68DE3 AC022616.5-201ENST00000518796 181 ntBASIC20.53■□□□□ 0.88
USF3Q68DE3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USF3Q68DE3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF3Q68DE3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USF3Q68DE3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USF3Q68DE3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USF3Q68DE3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.52■□□□□ 0.88
USF3Q68DE3 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USF3Q68DE3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
USF3Q68DE3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
USF3Q68DE3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
USF3Q68DE3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.51■□□□□ 0.87
USF3Q68DE3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.51■□□□□ 0.87
USF3Q68DE3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF3Q68DE3 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
USF3Q68DE3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USF3Q68DE3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
USF3Q68DE3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.51■□□□□ 0.87
USF3Q68DE3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USF3Q68DE3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USF3Q68DE3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.51■□□□□ 0.87
USF3Q68DE3 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF3Q68DE3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
USF3Q68DE3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
USF3Q68DE3 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USF3Q68DE3 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF3Q68DE3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF3Q68DE3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF3Q68DE3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
USF3Q68DE3 KRT125P-201ENST00000546827 989 ntBASIC20.5■□□□□ 0.87
USF3Q68DE3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
USF3Q68DE3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USF3Q68DE3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
USF3Q68DE3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF3Q68DE3 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USF3Q68DE3 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USF3Q68DE3 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
USF3Q68DE3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.48■□□□□ 0.87
USF3Q68DE3 MIR4787-201ENST00000607364 84 ntBASIC20.48■□□□□ 0.87
USF3Q68DE3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USF3Q68DE3 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USF3Q68DE3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
USF3Q68DE3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.47■□□□□ 0.87
USF3Q68DE3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.47■□□□□ 0.87
USF3Q68DE3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
USF3Q68DE3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.47■□□□□ 0.87
USF3Q68DE3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.47■□□□□ 0.87
USF3Q68DE3 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USF3Q68DE3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USF3Q68DE3 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF3Q68DE3 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.46■□□□□ 0.87
USF3Q68DE3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
USF3Q68DE3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF3Q68DE3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.46■□□□□ 0.87
USF3Q68DE3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
USF3Q68DE3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF3Q68DE3 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USF3Q68DE3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.46■□□□□ 0.87
USF3Q68DE3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USF3Q68DE3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.45■□□□□ 0.86
USF3Q68DE3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.45■□□□□ 0.86
USF3Q68DE3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
USF3Q68DE3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USF3Q68DE3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USF3Q68DE3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
USF3Q68DE3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms