Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.34■■■□□ 2.61
NCBP3Q53F19 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
NCBP3Q53F19 DUX4L9-201ENST00000449051 1259 ntBASIC31.34■■■□□ 2.61
NCBP3Q53F19 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.34■■■□□ 2.61
NCBP3Q53F19 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC31.33■■■□□ 2.61
NCBP3Q53F19 AC018755.3-202ENST00000596210 929 ntBASIC31.33■■■□□ 2.61
NCBP3Q53F19 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC31.33■■■□□ 2.61
NCBP3Q53F19 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NCBP3Q53F19 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NCBP3Q53F19 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NCBP3Q53F19 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.32■■■□□ 2.6
NCBP3Q53F19 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
NCBP3Q53F19 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NCBP3Q53F19 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
NCBP3Q53F19 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
NCBP3Q53F19 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
NCBP3Q53F19 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
NCBP3Q53F19 AC087393.1-201ENST00000582896 145 ntBASIC31.31■■■□□ 2.6
NCBP3Q53F19 MIR6765-201ENST00000614092 87 ntBASIC31.31■■■□□ 2.6
NCBP3Q53F19 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
NCBP3Q53F19 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.31■■■□□ 2.6
NCBP3Q53F19 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
NCBP3Q53F19 RPS2P7-201ENST00000447334 885 ntBASIC31.3■■■□□ 2.6
NCBP3Q53F19 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NCBP3Q53F19 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC31.29■■■□□ 2.6
NCBP3Q53F19 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
NCBP3Q53F19 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC31.29■■■□□ 2.6
NCBP3Q53F19 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NCBP3Q53F19 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
NCBP3Q53F19 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
NCBP3Q53F19 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
NCBP3Q53F19 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC31.26■■■□□ 2.59
NCBP3Q53F19 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NCBP3Q53F19 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NCBP3Q53F19 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NCBP3Q53F19 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC31.25■■■□□ 2.59
NCBP3Q53F19 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
NCBP3Q53F19 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NCBP3Q53F19 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NCBP3Q53F19 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NCBP3Q53F19 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NCBP3Q53F19 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
NCBP3Q53F19 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC31.23■■■□□ 2.59
NCBP3Q53F19 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NCBP3Q53F19 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NCBP3Q53F19 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC31.22■■■□□ 2.59
NCBP3Q53F19 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
NCBP3Q53F19 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.21■■■□□ 2.59
NCBP3Q53F19 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NCBP3Q53F19 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
NCBP3Q53F19 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.21■■■□□ 2.59
NCBP3Q53F19 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NCBP3Q53F19 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NCBP3Q53F19 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC31.21■■■□□ 2.59
NCBP3Q53F19 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NCBP3Q53F19 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
NCBP3Q53F19 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
NCBP3Q53F19 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.58
NCBP3Q53F19 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NCBP3Q53F19 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
NCBP3Q53F19 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
NCBP3Q53F19 AC019171.1-201ENST00000601251 1056 ntBASIC31.19■■■□□ 2.58
NCBP3Q53F19 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.19■■■□□ 2.58
NCBP3Q53F19 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NCBP3Q53F19 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NCBP3Q53F19 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC31.18■■■□□ 2.58
NCBP3Q53F19 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC31.18■■■□□ 2.58
NCBP3Q53F19 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NCBP3Q53F19 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
NCBP3Q53F19 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NCBP3Q53F19 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.18■■■□□ 2.58
NCBP3Q53F19 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
NCBP3Q53F19 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC31.18■■■□□ 2.58
NCBP3Q53F19 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NCBP3Q53F19 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
NCBP3Q53F19 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
NCBP3Q53F19 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
NCBP3Q53F19 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
NCBP3Q53F19 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC31.17■■■□□ 2.58
NCBP3Q53F19 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
NCBP3Q53F19 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
NCBP3Q53F19 AC020928.2-201ENST00000588717 2197 ntBASIC31.16■■■□□ 2.58
NCBP3Q53F19 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.16■■■□□ 2.58
NCBP3Q53F19 LONRF2P2-201ENST00000439212 571 ntBASIC31.16■■■□□ 2.58
NCBP3Q53F19 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
NCBP3Q53F19 SLC6A10P-202ENST00000431994 2058 ntBASIC31.16■■■□□ 2.58
NCBP3Q53F19 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NCBP3Q53F19 AC004987.1-201ENST00000428627 508 ntBASIC31.15■■■□□ 2.58
NCBP3Q53F19 ATP5G2P3-201ENST00000429083 425 ntBASIC31.15■■■□□ 2.58
NCBP3Q53F19 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.15■■■□□ 2.58
NCBP3Q53F19 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NCBP3Q53F19 CEBPA-AS1-201ENST00000592982 2198 ntBASIC31.15■■■□□ 2.58
NCBP3Q53F19 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.58
NCBP3Q53F19 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NCBP3Q53F19 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NCBP3Q53F19 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC31.14■■■□□ 2.58
NCBP3Q53F19 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
NCBP3Q53F19 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC31.14■■■□□ 2.58
NCBP3Q53F19 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
NCBP3Q53F19 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC31.14■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms