Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.14■■□□□ 1.3
FOXA1P55317 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.3
FOXA1P55317 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
FOXA1P55317 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
FOXA1P55317 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
FOXA1P55317 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
FOXA1P55317 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
FOXA1P55317 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.13■■□□□ 1.29
FOXA1P55317 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.13■■□□□ 1.29
FOXA1P55317 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.13■■□□□ 1.29
FOXA1P55317 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.13■■□□□ 1.29
FOXA1P55317 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXA1P55317 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
FOXA1P55317 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.12■■□□□ 1.29
FOXA1P55317 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
FOXA1P55317 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.12■■□□□ 1.29
FOXA1P55317 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.12■■□□□ 1.29
FOXA1P55317 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
FOXA1P55317 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
FOXA1P55317 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
FOXA1P55317 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
FOXA1P55317 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
FOXA1P55317 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
FOXA1P55317 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.11■■□□□ 1.29
FOXA1P55317 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
FOXA1P55317 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.11■■□□□ 1.29
FOXA1P55317 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
FOXA1P55317 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
FOXA1P55317 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
FOXA1P55317 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
FOXA1P55317 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
FOXA1P55317 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
FOXA1P55317 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.09■■□□□ 1.29
FOXA1P55317 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
FOXA1P55317 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
FOXA1P55317 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
FOXA1P55317 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
FOXA1P55317 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
FOXA1P55317 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.09■■□□□ 1.29
FOXA1P55317 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
FOXA1P55317 AC092296.2-201ENST00000589470 999 ntBASIC23.08■■□□□ 1.29
FOXA1P55317 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
FOXA1P55317 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
FOXA1P55317 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.07■■□□□ 1.28
FOXA1P55317 MIR639-201ENST00000384974 98 ntBASIC23.07■■□□□ 1.28
FOXA1P55317 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.07■■□□□ 1.28
FOXA1P55317 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
FOXA1P55317 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
FOXA1P55317 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC23.06■■□□□ 1.28
FOXA1P55317 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
FOXA1P55317 SMPD5-203ENST00000639008 1464 ntBASIC23.06■■□□□ 1.28
FOXA1P55317 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.06■■□□□ 1.28
FOXA1P55317 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
FOXA1P55317 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
FOXA1P55317 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.06■■□□□ 1.28
FOXA1P55317 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
FOXA1P55317 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
FOXA1P55317 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.06■■□□□ 1.28
FOXA1P55317 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
FOXA1P55317 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
FOXA1P55317 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
FOXA1P55317 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.05■■□□□ 1.28
FOXA1P55317 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.05■■□□□ 1.28
FOXA1P55317 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.05■■□□□ 1.28
FOXA1P55317 MIR3960-201ENST00000583311 91 ntBASIC23.05■■□□□ 1.28
FOXA1P55317 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
FOXA1P55317 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
FOXA1P55317 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
FOXA1P55317 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
FOXA1P55317 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.04■■□□□ 1.28
FOXA1P55317 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
FOXA1P55317 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
FOXA1P55317 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
FOXA1P55317 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.04■■□□□ 1.28
FOXA1P55317 LINC01124-201ENST00000409786 2117 ntBASIC23.04■■□□□ 1.28
FOXA1P55317 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
FOXA1P55317 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
FOXA1P55317 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
FOXA1P55317 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
FOXA1P55317 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
FOXA1P55317 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
FOXA1P55317 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
FOXA1P55317 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
FOXA1P55317 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
FOXA1P55317 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms