Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL8A1P27658 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
COL8A1P27658 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL8A1P27658 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
COL8A1P27658 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.04■□□□□ 0.96
COL8A1P27658 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL8A1P27658 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL8A1P27658 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL8A1P27658 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.04■□□□□ 0.96
COL8A1P27658 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.04■□□□□ 0.96
COL8A1P27658 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.04■□□□□ 0.96
COL8A1P27658 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL8A1P27658 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
COL8A1P27658 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL8A1P27658 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL8A1P27658 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL8A1P27658 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.02■□□□□ 0.96
COL8A1P27658 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.02■□□□□ 0.96
COL8A1P27658 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL8A1P27658 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL8A1P27658 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.01■□□□□ 0.95
COL8A1P27658 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL8A1P27658 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.01■□□□□ 0.95
COL8A1P27658 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.01■□□□□ 0.95
COL8A1P27658 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.01■□□□□ 0.95
COL8A1P27658 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.01■□□□□ 0.95
COL8A1P27658 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
COL8A1P27658 ABCB10P3-201ENST00000561950 2166 ntBASIC21■□□□□ 0.95
COL8A1P27658 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL8A1P27658 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL8A1P27658 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL8A1P27658 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL8A1P27658 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21■□□□□ 0.95
COL8A1P27658 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
COL8A1P27658 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL8A1P27658 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21■□□□□ 0.95
COL8A1P27658 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
COL8A1P27658 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL8A1P27658 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL8A1P27658 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.99■□□□□ 0.95
COL8A1P27658 SUDS3P1-201ENST00000505831 966 ntBASIC20.99■□□□□ 0.95
COL8A1P27658 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL8A1P27658 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.99■□□□□ 0.95
COL8A1P27658 MIR4281-201ENST00000580852 62 ntBASIC20.99■□□□□ 0.95
COL8A1P27658 AL031432.3-201ENST00000607698 485 ntBASIC20.99■□□□□ 0.95
COL8A1P27658 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL8A1P27658 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.99■□□□□ 0.95
COL8A1P27658 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL8A1P27658 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.98■□□□□ 0.95
COL8A1P27658 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.98■□□□□ 0.95
COL8A1P27658 AP002414.2-202ENST00000590929 1450 ntBASIC20.98■□□□□ 0.95
COL8A1P27658 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL8A1P27658 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL8A1P27658 UNC93B3-201ENST00000308076 687 ntBASIC20.97■□□□□ 0.95
COL8A1P27658 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL8A1P27658 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL8A1P27658 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.97■□□□□ 0.95
COL8A1P27658 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL8A1P27658 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
COL8A1P27658 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL8A1P27658 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.97■□□□□ 0.95
COL8A1P27658 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
COL8A1P27658 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL8A1P27658 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.96■□□□□ 0.95
COL8A1P27658 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL8A1P27658 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL8A1P27658 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.96■□□□□ 0.95
COL8A1P27658 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.96■□□□□ 0.95
COL8A1P27658 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.96■□□□□ 0.95
COL8A1P27658 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.96■□□□□ 0.95
COL8A1P27658 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.96■□□□□ 0.95
COL8A1P27658 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL8A1P27658 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL8A1P27658 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.95■□□□□ 0.94
COL8A1P27658 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.95■□□□□ 0.94
COL8A1P27658 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL8A1P27658 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL8A1P27658 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
COL8A1P27658 ST7-AS1-201ENST00000456775 1889 ntBASIC20.94■□□□□ 0.94
COL8A1P27658 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL8A1P27658 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL8A1P27658 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL8A1P27658 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL8A1P27658 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.94■□□□□ 0.94
COL8A1P27658 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL8A1P27658 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
COL8A1P27658 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL8A1P27658 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
COL8A1P27658 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
COL8A1P27658 AL136162.1-201ENST00000607711 1078 ntBASIC20.93■□□□□ 0.94
COL8A1P27658 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.93■□□□□ 0.94
COL8A1P27658 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.93■□□□□ 0.94
COL8A1P27658 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.93■□□□□ 0.94
COL8A1P27658 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL8A1P27658 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.92■□□□□ 0.94
COL8A1P27658 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL8A1P27658 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.92■□□□□ 0.94
COL8A1P27658 AC105265.2-201ENST00000467189 838 ntBASIC20.92■□□□□ 0.94
COL8A1P27658 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
COL8A1P27658 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms