Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.76■■□□□ 1.07
FREM3P0C091 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.76■■□□□ 1.07
FREM3P0C091 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FREM3P0C091 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
FREM3P0C091 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.76■■□□□ 1.07
FREM3P0C091 AC009299.2-201ENST00000482477 511 ntBASIC21.76■■□□□ 1.07
FREM3P0C091 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
FREM3P0C091 AC092803.2-201ENST00000564287 1899 ntBASIC21.75■■□□□ 1.07
FREM3P0C091 AC087393.1-201ENST00000582896 145 ntBASIC21.75■■□□□ 1.07
FREM3P0C091 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.75■■□□□ 1.07
FREM3P0C091 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
FREM3P0C091 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.74■■□□□ 1.07
FREM3P0C091 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.74■■□□□ 1.07
FREM3P0C091 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
FREM3P0C091 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
FREM3P0C091 AC091060.1-201ENST00000623524 1766 ntBASIC21.74■■□□□ 1.07
FREM3P0C091 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
FREM3P0C091 BHLHE23-202ENST00000612929 1109 ntBASIC21.74■■□□□ 1.07
FREM3P0C091 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
FREM3P0C091 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
FREM3P0C091 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.73■■□□□ 1.07
FREM3P0C091 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
FREM3P0C091 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
FREM3P0C091 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
FREM3P0C091 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
FREM3P0C091 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.73■■□□□ 1.07
FREM3P0C091 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
FREM3P0C091 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
FREM3P0C091 AC074183.2-201ENST00000623112 922 ntBASIC21.72■■□□□ 1.07
FREM3P0C091 KRT8P33-201ENST00000508125 1423 ntBASIC21.72■■□□□ 1.07
FREM3P0C091 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
FREM3P0C091 AC096887.2-201ENST00000623443 1957 ntBASIC21.71■■□□□ 1.07
FREM3P0C091 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.71■■□□□ 1.07
FREM3P0C091 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.7■■□□□ 1.07
FREM3P0C091 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
FREM3P0C091 RPS2P7-201ENST00000447334 885 ntBASIC21.7■■□□□ 1.06
FREM3P0C091 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
FREM3P0C091 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
FREM3P0C091 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
FREM3P0C091 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
FREM3P0C091 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FREM3P0C091 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.69■■□□□ 1.06
FREM3P0C091 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.69■■□□□ 1.06
FREM3P0C091 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
FREM3P0C091 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FREM3P0C091 KRT18P10-201ENST00000388836 1287 ntBASIC21.69■■□□□ 1.06
FREM3P0C091 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
FREM3P0C091 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FREM3P0C091 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.69■■□□□ 1.06
FREM3P0C091 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FREM3P0C091 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.68■■□□□ 1.06
FREM3P0C091 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FREM3P0C091 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
FREM3P0C091 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FREM3P0C091 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
FREM3P0C091 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FREM3P0C091 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FREM3P0C091 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.67■■□□□ 1.06
FREM3P0C091 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.67■■□□□ 1.06
FREM3P0C091 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
FREM3P0C091 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.66■■□□□ 1.06
FREM3P0C091 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
FREM3P0C091 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.66■■□□□ 1.06
FREM3P0C091 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
FREM3P0C091 AC018755.3-202ENST00000596210 929 ntBASIC21.66■■□□□ 1.06
FREM3P0C091 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.66■■□□□ 1.06
FREM3P0C091 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FREM3P0C091 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FREM3P0C091 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
FREM3P0C091 AC022616.5-201ENST00000518796 181 ntBASIC21.65■■□□□ 1.06
FREM3P0C091 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.65■■□□□ 1.06
FREM3P0C091 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.65■■□□□ 1.06
FREM3P0C091 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
FREM3P0C091 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
FREM3P0C091 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
FREM3P0C091 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms