Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 AL391121.1-201ENST00000607967 1349 ntBASIC17.86■□□□□ 0.45
HLA-DQA1P01909 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DQA1P01909 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DQA1P01909 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DQA1P01909 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DQA1P01909 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DQA1P01909 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DQA1P01909 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
HLA-DQA1P01909 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.85■□□□□ 0.45
HLA-DQA1P01909 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC17.85■□□□□ 0.45
HLA-DQA1P01909 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DQA1P01909 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 AC141586.4-201ENST00000624558 1573 ntBASIC17.84■□□□□ 0.45
HLA-DQA1P01909 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DQA1P01909 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
HLA-DQA1P01909 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DQA1P01909 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DQA1P01909 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.83■□□□□ 0.44
HLA-DQA1P01909 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DQA1P01909 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DQA1P01909 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC17.83■□□□□ 0.44
HLA-DQA1P01909 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DQA1P01909 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DQA1P01909 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
HLA-DQA1P01909 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DQA1P01909 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DQA1P01909 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 AL117328.2-201ENST00000624617 1940 ntBASIC17.81■□□□□ 0.44
HLA-DQA1P01909 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
HLA-DQA1P01909 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DQA1P01909 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC17.8■□□□□ 0.44
HLA-DQA1P01909 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC17.8■□□□□ 0.44
HLA-DQA1P01909 CAHM-201ENST00000604200 896 ntBASIC17.8■□□□□ 0.44
HLA-DQA1P01909 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DQA1P01909 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DQA1P01909 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DQA1P01909 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DQA1P01909 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HLA-DQA1P01909 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC17.79■□□□□ 0.44
HLA-DQA1P01909 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms