Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PGK1P00558 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PGK1P00558 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.94■■□□□ 1.9
PGK1P00558 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.94■■□□□ 1.9
PGK1P00558 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
PGK1P00558 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.94■■□□□ 1.9
PGK1P00558 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PGK1P00558 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.94■■□□□ 1.9
PGK1P00558 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.94■■□□□ 1.9
PGK1P00558 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.94■■□□□ 1.9
PGK1P00558 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PGK1P00558 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PGK1P00558 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.93■■□□□ 1.9
PGK1P00558 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.93■■□□□ 1.9
PGK1P00558 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
PGK1P00558 AC131281.2-201ENST00000520478 145 ntBASIC26.93■■□□□ 1.9
PGK1P00558 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
PGK1P00558 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.93■■□□□ 1.9
PGK1P00558 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
PGK1P00558 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
PGK1P00558 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.93■■□□□ 1.9
PGK1P00558 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
PGK1P00558 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.92■■□□□ 1.9
PGK1P00558 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
PGK1P00558 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.92■■□□□ 1.9
PGK1P00558 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
PGK1P00558 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.92■■□□□ 1.9
PGK1P00558 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
PGK1P00558 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
PGK1P00558 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
PGK1P00558 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
PGK1P00558 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.91■■□□□ 1.9
PGK1P00558 AL139246.5-201ENST00000606645 996 ntBASIC26.91■■□□□ 1.9
PGK1P00558 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.91■■□□□ 1.9
PGK1P00558 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.9■■□□□ 1.9
PGK1P00558 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
PGK1P00558 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
PGK1P00558 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
PGK1P00558 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.9■■□□□ 1.9
PGK1P00558 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC26.9■■□□□ 1.9
PGK1P00558 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.9■■□□□ 1.9
PGK1P00558 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.9■■□□□ 1.9
PGK1P00558 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.89■■□□□ 1.9
PGK1P00558 MIR4281-201ENST00000580852 62 ntBASIC26.89■■□□□ 1.9
PGK1P00558 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.89■■□□□ 1.9
PGK1P00558 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
PGK1P00558 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.89■■□□□ 1.89
PGK1P00558 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
PGK1P00558 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
PGK1P00558 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
PGK1P00558 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
PGK1P00558 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
PGK1P00558 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.87■■□□□ 1.89
PGK1P00558 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
PGK1P00558 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
PGK1P00558 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
PGK1P00558 AL136116.3-201ENST00000402907 1138 ntBASIC26.86■■□□□ 1.89
PGK1P00558 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
PGK1P00558 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
PGK1P00558 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
PGK1P00558 AC142472.1-201ENST00000612013 1741 ntBASIC26.85■■□□□ 1.89
PGK1P00558 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
PGK1P00558 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
PGK1P00558 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.85■■□□□ 1.89
PGK1P00558 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.85■■□□□ 1.89
PGK1P00558 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
PGK1P00558 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PGK1P00558 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
PGK1P00558 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PGK1P00558 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.84■■□□□ 1.89
PGK1P00558 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
PGK1P00558 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PGK1P00558 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
PGK1P00558 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
PGK1P00558 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.83■■□□□ 1.89
PGK1P00558 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.83■■□□□ 1.89
PGK1P00558 AC010997.5-201ENST00000609182 354 ntBASIC26.83■■□□□ 1.89
PGK1P00558 AL117332.1-201ENST00000622628 974 ntBASIC26.83■■□□□ 1.89
PGK1P00558 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.82■■□□□ 1.88
PGK1P00558 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
PGK1P00558 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
PGK1P00558 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
PGK1P00558 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
PGK1P00558 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
PGK1P00558 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
PGK1P00558 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
PGK1P00558 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
PGK1P00558 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PGK1P00558 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.81■■□□□ 1.88
PGK1P00558 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.81■■□□□ 1.88
PGK1P00558 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.81■■□□□ 1.88
PGK1P00558 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
PGK1P00558 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
PGK1P00558 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
PGK1P00558 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.8■■□□□ 1.88
PGK1P00558 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.8■■□□□ 1.88
PGK1P00558 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.8■■□□□ 1.88
PGK1P00558 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.8■■□□□ 1.88
PGK1P00558 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.8■■□□□ 1.88
PGK1P00558 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.79■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms