Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP1O15259 BX255925.1-201ENST00000566954 1854 ntBASIC30.21■■■□□ 2.43
NPHP1O15259 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NPHP1O15259 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NPHP1O15259 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
NPHP1O15259 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.43
NPHP1O15259 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.2■■■□□ 2.43
NPHP1O15259 LINC01003-201ENST00000564834 1764 ntBASIC30.2■■■□□ 2.42
NPHP1O15259 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
NPHP1O15259 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC30.19■■■□□ 2.42
NPHP1O15259 AC021242.3-201ENST00000607598 1377 ntBASIC30.19■■■□□ 2.42
NPHP1O15259 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.19■■■□□ 2.42
NPHP1O15259 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
NPHP1O15259 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
NPHP1O15259 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
NPHP1O15259 AC139426.1-201ENST00000568218 2529 ntBASIC30.19■■■□□ 2.42
NPHP1O15259 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP1O15259 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP1O15259 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP1O15259 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP1O15259 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.17■■■□□ 2.42
NPHP1O15259 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.17■■■□□ 2.42
NPHP1O15259 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP1O15259 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.17■■■□□ 2.42
NPHP1O15259 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.16■■■□□ 2.42
NPHP1O15259 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP1O15259 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP1O15259 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP1O15259 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP1O15259 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
NPHP1O15259 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
NPHP1O15259 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.15■■■□□ 2.42
NPHP1O15259 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.14■■■□□ 2.42
NPHP1O15259 AC092028.1-203ENST00000608262 953 ntBASIC30.14■■■□□ 2.42
NPHP1O15259 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.14■■■□□ 2.42
NPHP1O15259 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
NPHP1O15259 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC30.14■■■□□ 2.42
NPHP1O15259 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP1O15259 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.13■■■□□ 2.41
NPHP1O15259 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP1O15259 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.13■■■□□ 2.41
NPHP1O15259 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.13■■■□□ 2.41
NPHP1O15259 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC30.13■■■□□ 2.41
NPHP1O15259 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
NPHP1O15259 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP1O15259 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP1O15259 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.12■■■□□ 2.41
NPHP1O15259 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP1O15259 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP1O15259 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP1O15259 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP1O15259 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP1O15259 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP1O15259 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.1■■■□□ 2.41
NPHP1O15259 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP1O15259 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.09■■■□□ 2.41
NPHP1O15259 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
NPHP1O15259 MIR638-201ENST00000385237 100 ntBASIC30.09■■■□□ 2.41
NPHP1O15259 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
NPHP1O15259 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
NPHP1O15259 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.09■■■□□ 2.41
NPHP1O15259 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.09■■■□□ 2.41
NPHP1O15259 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.09■■■□□ 2.41
NPHP1O15259 AC142472.1-201ENST00000612013 1741 ntBASIC30.09■■■□□ 2.41
NPHP1O15259 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP1O15259 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.08■■■□□ 2.41
NPHP1O15259 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP1O15259 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.08■■■□□ 2.41
NPHP1O15259 MIR4281-201ENST00000580852 62 ntBASIC30.08■■■□□ 2.41
NPHP1O15259 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
NPHP1O15259 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP1O15259 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP1O15259 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
NPHP1O15259 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
NPHP1O15259 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
NPHP1O15259 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC30.07■■■□□ 2.4
NPHP1O15259 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.07■■■□□ 2.4
NPHP1O15259 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP1O15259 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP1O15259 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC30.06■■■□□ 2.4
NPHP1O15259 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP1O15259 AC131281.2-201ENST00000520478 145 ntBASIC30.06■■■□□ 2.4
NPHP1O15259 AL139246.5-201ENST00000606645 996 ntBASIC30.06■■■□□ 2.4
NPHP1O15259 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP1O15259 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC30.05■■■□□ 2.4
NPHP1O15259 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.05■■■□□ 2.4
NPHP1O15259 AL136116.3-201ENST00000402907 1138 ntBASIC30.05■■■□□ 2.4
NPHP1O15259 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.05■■■□□ 2.4
NPHP1O15259 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.05■■■□□ 2.4
NPHP1O15259 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP1O15259 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP1O15259 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP1O15259 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP1O15259 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
NPHP1O15259 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.04■■■□□ 2.4
NPHP1O15259 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.04■■■□□ 2.4
NPHP1O15259 MTDHP2-201ENST00000601468 714 ntBASIC30.04■■■□□ 2.4
NPHP1O15259 AC010997.5-201ENST00000609182 354 ntBASIC30.04■■■□□ 2.4
NPHP1O15259 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
NPHP1O15259 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms