Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHKB-CPT1BH3BT56 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
CHKB-CPT1BH3BT56 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHKB-CPT1BH3BT56 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHKB-CPT1BH3BT56 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 AL139393.2-201ENST00000608721 2025 ntBASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHKB-CPT1BH3BT56 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CHKB-CPT1BH3BT56 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CHKB-CPT1BH3BT56 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHKB-CPT1BH3BT56 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC13.46□□□□□ -0.25
CHKB-CPT1BH3BT56 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHKB-CPT1BH3BT56 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHKB-CPT1BH3BT56 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHKB-CPT1BH3BT56 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHKB-CPT1BH3BT56 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC13.46□□□□□ -0.26
CHKB-CPT1BH3BT56 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CHKB-CPT1BH3BT56 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CHKB-CPT1BH3BT56 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CHKB-CPT1BH3BT56 AC090340.1-201ENST00000620778 4980 ntBASIC13.45□□□□□ -0.26
CHKB-CPT1BH3BT56 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CHKB-CPT1BH3BT56 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHKB-CPT1BH3BT56 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC13.45□□□□□ -0.26
CHKB-CPT1BH3BT56 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CHKB-CPT1BH3BT56 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC13.45□□□□□ -0.26
CHKB-CPT1BH3BT56 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CHKB-CPT1BH3BT56 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 BX255925.1-201ENST00000566954 1854 ntBASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHKB-CPT1BH3BT56 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHKB-CPT1BH3BT56 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 AL135925.1-201ENST00000605920 1701 ntBASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHKB-CPT1BH3BT56 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHKB-CPT1BH3BT56 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHKB-CPT1BH3BT56 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CHKB-CPT1BH3BT56 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHKB-CPT1BH3BT56 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CHKB-CPT1BH3BT56 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CHKB-CPT1BH3BT56 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CHKB-CPT1BH3BT56 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHKB-CPT1BH3BT56 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 260 ms