Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3L4A6NDZ8 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3L4A6NDZ8 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3L4A6NDZ8 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
MBD3L4A6NDZ8 Z92544.1-202ENST00000571933 1220 ntBASIC21.23■□□□□ 0.99
MBD3L4A6NDZ8 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3L4A6NDZ8 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3L4A6NDZ8 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3L4A6NDZ8 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3L4A6NDZ8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.22■□□□□ 0.99
MBD3L4A6NDZ8 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.22■□□□□ 0.99
MBD3L4A6NDZ8 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.22■□□□□ 0.99
MBD3L4A6NDZ8 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3L4A6NDZ8 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.21■□□□□ 0.99
MBD3L4A6NDZ8 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3L4A6NDZ8 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.2■□□□□ 0.99
MBD3L4A6NDZ8 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.2■□□□□ 0.98
MBD3L4A6NDZ8 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD3L4A6NDZ8 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MBD3L4A6NDZ8 THA1P-201ENST00000590384 1145 ntBASIC21.2■□□□□ 0.98
MBD3L4A6NDZ8 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.2■□□□□ 0.98
MBD3L4A6NDZ8 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD3L4A6NDZ8 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 AL592295.1-201ENST00000400984 884 ntBASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 AC239859.2-201ENST00000444165 318 ntBASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.19■□□□□ 0.98
MBD3L4A6NDZ8 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.18■□□□□ 0.98
MBD3L4A6NDZ8 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.18■□□□□ 0.98
MBD3L4A6NDZ8 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MBD3L4A6NDZ8 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MBD3L4A6NDZ8 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MBD3L4A6NDZ8 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.16■□□□□ 0.98
MBD3L4A6NDZ8 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3L4A6NDZ8 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3L4A6NDZ8 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3L4A6NDZ8 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
MBD3L4A6NDZ8 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.16■□□□□ 0.98
MBD3L4A6NDZ8 AC120024.1-201ENST00000562672 995 ntBASIC21.16■□□□□ 0.98
MBD3L4A6NDZ8 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.16■□□□□ 0.98
MBD3L4A6NDZ8 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3L4A6NDZ8 BX664725.1-201ENST00000438252 379 ntBASIC21.15■□□□□ 0.98
MBD3L4A6NDZ8 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.15■□□□□ 0.98
MBD3L4A6NDZ8 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
MBD3L4A6NDZ8 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3L4A6NDZ8 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MBD3L4A6NDZ8 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MBD3L4A6NDZ8 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
MBD3L4A6NDZ8 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
MBD3L4A6NDZ8 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3L4A6NDZ8 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
MBD3L4A6NDZ8 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.14■□□□□ 0.97
MBD3L4A6NDZ8 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3L4A6NDZ8 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3L4A6NDZ8 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.13■□□□□ 0.97
MBD3L4A6NDZ8 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
MBD3L4A6NDZ8 KRT125P-201ENST00000546827 989 ntBASIC21.13■□□□□ 0.97
MBD3L4A6NDZ8 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
MBD3L4A6NDZ8 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MBD3L4A6NDZ8 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MBD3L4A6NDZ8 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
MBD3L4A6NDZ8 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 AC137630.3-201ENST00000607245 391 ntBASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
MBD3L4A6NDZ8 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
MBD3L4A6NDZ8 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MBD3L4A6NDZ8 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MBD3L4A6NDZ8 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MBD3L4A6NDZ8 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
MBD3L4A6NDZ8 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MBD3L4A6NDZ8 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MBD3L4A6NDZ8 AL356441.2-201ENST00000443009 864 ntBASIC21.1■□□□□ 0.97
MBD3L4A6NDZ8 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.1■□□□□ 0.97
MBD3L4A6NDZ8 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
MBD3L4A6NDZ8 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.09■□□□□ 0.97
MBD3L4A6NDZ8 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD3L4A6NDZ8 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
MBD3L4A6NDZ8 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD3L4A6NDZ8 MIR4787-201ENST00000607364 84 ntBASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms