Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
TRAV4A0A0B4J268 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TRAV4A0A0B4J268 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAV4A0A0B4J268 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV4A0A0B4J268 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV4A0A0B4J268 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV4A0A0B4J268 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV4A0A0B4J268 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV4A0A0B4J268 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV4A0A0B4J268 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV4A0A0B4J268 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC17.1■□□□□ 0.33
TRAV4A0A0B4J268 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV4A0A0B4J268 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV4A0A0B4J268 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV4A0A0B4J268 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV4A0A0B4J268 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV4A0A0B4J268 RP9P-202ENST00000450133 1212 ntBASIC17.09■□□□□ 0.33
TRAV4A0A0B4J268 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TRAV4A0A0B4J268 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV4A0A0B4J268 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
TRAV4A0A0B4J268 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TRAV4A0A0B4J268 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
TRAV4A0A0B4J268 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
TRAV4A0A0B4J268 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 CEBPA-AS1-201ENST00000592982 2198 ntBASIC17.08■□□□□ 0.32
TRAV4A0A0B4J268 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV4A0A0B4J268 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 AC097639.1-201ENST00000565519 1891 ntBASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 GPX1-201ENST00000419349 1106 ntBASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV4A0A0B4J268 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 AC007029.1-201ENST00000604183 313 ntBASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV4A0A0B4J268 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 AC093536.1-201ENST00000569153 554 ntBASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
TRAV4A0A0B4J268 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV4A0A0B4J268 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV4A0A0B4J268 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV4A0A0B4J268 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
TRAV4A0A0B4J268 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV4A0A0B4J268 AC142381.3-201ENST00000568208 1670 ntBASIC17.03■□□□□ 0.32
TRAV4A0A0B4J268 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
TRAV4A0A0B4J268 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV4A0A0B4J268 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV4A0A0B4J268 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms