Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
TRAV41A0A0B4J266 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
TRAV41A0A0B4J266 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAV41A0A0B4J266 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV41A0A0B4J266 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
TRAV41A0A0B4J266 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
TRAV41A0A0B4J266 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV41A0A0B4J266 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV41A0A0B4J266 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 AC139795.1-202ENST00000500444 432 ntBASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
TRAV41A0A0B4J266 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 RPS2P7-201ENST00000447334 885 ntBASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV41A0A0B4J266 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV41A0A0B4J266 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV41A0A0B4J266 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV41A0A0B4J266 BHLHE23-202ENST00000612929 1109 ntBASIC18.77■□□□□ 0.6
TRAV41A0A0B4J266 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV41A0A0B4J266 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC18.77■□□□□ 0.6
TRAV41A0A0B4J266 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 GUK1-208ENST00000366728 842 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV41A0A0B4J266 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV41A0A0B4J266 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
TRAV41A0A0B4J266 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.75■□□□□ 0.59
TRAV41A0A0B4J266 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAV41A0A0B4J266 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
TRAV41A0A0B4J266 AC087393.1-201ENST00000582896 145 ntBASIC18.75■□□□□ 0.59
TRAV41A0A0B4J266 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAV41A0A0B4J266 AC097639.1-201ENST00000565519 1891 ntBASIC18.75■□□□□ 0.59
TRAV41A0A0B4J266 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV41A0A0B4J266 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV41A0A0B4J266 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV41A0A0B4J266 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.73■□□□□ 0.59
TRAV41A0A0B4J266 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV41A0A0B4J266 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV41A0A0B4J266 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV41A0A0B4J266 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV41A0A0B4J266 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC18.72■□□□□ 0.59
TRAV41A0A0B4J266 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV41A0A0B4J266 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV41A0A0B4J266 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC18.72■□□□□ 0.59
TRAV41A0A0B4J266 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 AC074183.2-201ENST00000623112 922 ntBASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV41A0A0B4J266 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
TRAV41A0A0B4J266 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV41A0A0B4J266 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
TRAV41A0A0B4J266 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms