Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
CDH9Q9ULB4 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 MIR346-201ENST00000362234 95 ntBASIC17.6■□□□□ 0.41
CDH9Q9ULB4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 FAM58DP-201ENST00000428076 619 ntBASIC17.6■□□□□ 0.41
CDH9Q9ULB4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 AL138918.1-201ENST00000568306 659 ntBASIC17.6■□□□□ 0.41
CDH9Q9ULB4 AP000842.3-202ENST00000569238 1080 ntBASIC17.6■□□□□ 0.41
CDH9Q9ULB4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH9Q9ULB4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 AC078925.2-201ENST00000624013 1973 ntBASIC17.59■□□□□ 0.41
CDH9Q9ULB4 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 AC105233.2-201ENST00000523697 349 ntBASIC17.59■□□□□ 0.41
CDH9Q9ULB4 AF228730.5-201ENST00000530288 346 ntBASIC17.59■□□□□ 0.41
CDH9Q9ULB4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 AC073389.1-201ENST00000595595 795 ntBASIC17.59■□□□□ 0.41
CDH9Q9ULB4 AC020765.3-201ENST00000613051 740 ntBASIC17.59■□□□□ 0.41
CDH9Q9ULB4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 LINC00628-201ENST00000628516 1289 ntBASIC17.59■□□□□ 0.41
CDH9Q9ULB4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 AL031731.1-201ENST00000642131 2094 ntBASIC17.59■□□□□ 0.41
CDH9Q9ULB4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH9Q9ULB4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDH9Q9ULB4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms