Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USB1Q9BQ65 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.03■□□□□ -0
USB1Q9BQ65 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.03■□□□□ -0
USB1Q9BQ65 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USB1Q9BQ65 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USB1Q9BQ65 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.03■□□□□ -0
USB1Q9BQ65 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.02■□□□□ -0
USB1Q9BQ65 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
USB1Q9BQ65 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
USB1Q9BQ65 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.02■□□□□ -0
USB1Q9BQ65 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.02■□□□□ -0
USB1Q9BQ65 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
USB1Q9BQ65 MIR1233-2-201ENST00000408138 82 ntBASIC15.02■□□□□ -0
USB1Q9BQ65 MIR1233-1-201ENST00000408722 82 ntBASIC15.02■□□□□ -0
USB1Q9BQ65 AP002336.2-201ENST00000528607 539 ntTSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.02■□□□□ -0
USB1Q9BQ65 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.02■□□□□ -0
USB1Q9BQ65 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
USB1Q9BQ65 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.02■□□□□ -0
USB1Q9BQ65 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
USB1Q9BQ65 AC079781.4-201ENST00000641908 219 ntBASIC15.02■□□□□ -0
USB1Q9BQ65 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USB1Q9BQ65 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
USB1Q9BQ65 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.02□□□□□ -0.01
USB1Q9BQ65 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
USB1Q9BQ65 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.02□□□□□ -0.01
USB1Q9BQ65 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.02□□□□□ -0.01
USB1Q9BQ65 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USB1Q9BQ65 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
USB1Q9BQ65 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
USB1Q9BQ65 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.02□□□□□ -0.01
USB1Q9BQ65 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.02□□□□□ -0.01
USB1Q9BQ65 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USB1Q9BQ65 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 AC008741.2-201ENST00000612792 3115 ntBASIC15.01□□□□□ -0.01
USB1Q9BQ65 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 UPF3AP3-201ENST00000420996 769 ntBASIC15.01□□□□□ -0.01
USB1Q9BQ65 MCCD1P2-201ENST00000423228 335 ntBASIC15.01□□□□□ -0.01
USB1Q9BQ65 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 AC007967.2-201ENST00000432613 625 ntBASIC15.01□□□□□ -0.01
USB1Q9BQ65 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USB1Q9BQ65 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
USB1Q9BQ65 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms