Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 HYMAI-201ENST00000635591 3347 ntBASIC15.06■□□□□ 0
PTP4A1Q93096 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 AL596087.1-201ENST00000400979 1969 ntBASIC15.06■□□□□ 0
PTP4A1Q93096 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.06■□□□□ 0
PTP4A1Q93096 AC132008.2-207ENST00000454517 770 ntBASIC15.06■□□□□ 0
PTP4A1Q93096 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.06■□□□□ 0
PTP4A1Q93096 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.06■□□□□ 0
PTP4A1Q93096 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.06■□□□□ 0
PTP4A1Q93096 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.06■□□□□ 0
PTP4A1Q93096 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.06■□□□□ 0
PTP4A1Q93096 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.06■□□□□ 0
PTP4A1Q93096 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.06■□□□□ 0
PTP4A1Q93096 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PTP4A1Q93096 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
PTP4A1Q93096 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.06■□□□□ 0
PTP4A1Q93096 AL512652.2-201ENST00000625156 1716 ntBASIC15.06■□□□□ 0
PTP4A1Q93096 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.06■□□□□ 0
PTP4A1Q93096 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTP4A1Q93096 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.05■□□□□ 0
PTP4A1Q93096 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PTP4A1Q93096 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
PTP4A1Q93096 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
PTP4A1Q93096 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
PTP4A1Q93096 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.05■□□□□ 0
PTP4A1Q93096 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.05■□□□□ -0
PTP4A1Q93096 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.05■□□□□ -0
PTP4A1Q93096 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.05■□□□□ -0
PTP4A1Q93096 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.05■□□□□ -0
PTP4A1Q93096 AP001269.4-201ENST00000609611 512 ntBASIC15.05■□□□□ -0
PTP4A1Q93096 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.05■□□□□ -0
PTP4A1Q93096 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.05■□□□□ -0
PTP4A1Q93096 TOP3BP1-201ENST00000420768 1380 ntBASIC15.05■□□□□ -0
PTP4A1Q93096 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 CROCCP1-201ENST00000426910 5675 ntBASIC15.05■□□□□ -0
PTP4A1Q93096 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
PTP4A1Q93096 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.05■□□□□ -0
PTP4A1Q93096 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
PTP4A1Q93096 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
PTP4A1Q93096 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PTP4A1Q93096 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PTP4A1Q93096 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTP4A1Q93096 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTP4A1Q93096 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTP4A1Q93096 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -0
PTP4A1Q93096 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTP4A1Q93096 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
PTP4A1Q93096 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTP4A1Q93096 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms