Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 AC126755.1-201ENST00000525846 6405 ntBASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 TP73-AS1-210ENST00000637775 1455 ntBASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 AC148477.5-201ENST00000625164 1645 ntBASIC16.67■□□□□ 0.26
NUDCD3Q8IVD9 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 AC097637.2-201ENST00000624096 1997 ntBASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUDCD3Q8IVD9 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 AL603832.2-201ENST00000566195 2125 ntBASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 GGT3P-204ENST00000453783 1664 ntBASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
NUDCD3Q8IVD9 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
NUDCD3Q8IVD9 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
NUDCD3Q8IVD9 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
NUDCD3Q8IVD9 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
NUDCD3Q8IVD9 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.26
NUDCD3Q8IVD9 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
NUDCD3Q8IVD9 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 AC068418.2-201ENST00000577309 3703 ntBASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.64■□□□□ 0.25
NUDCD3Q8IVD9 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms