Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 PGM5P2-202ENST00000637225 1043 ntBASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ZNF549Q6P9A3 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 MRPL20P1-201ENST00000400819 433 ntBASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 SLC25A6P4-201ENST00000586535 553 ntBASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 AC116407.3-201ENST00000623905 1129 ntBASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF549Q6P9A3 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
ZNF549Q6P9A3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.58■□□□□ 0.25
ZNF549Q6P9A3 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 AC098831.1-202ENST00000438821 336 ntBASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 AC009078.2-202ENST00000463353 338 ntBASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 AC005412.3-201ENST00000580309 715 ntBASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 ACTL9-202ENST00000612068 1252 ntBASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 CYP2T1P-202ENST00000641596 2535 ntBASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF549Q6P9A3 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF549Q6P9A3 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF549Q6P9A3 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF549Q6P9A3 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF549Q6P9A3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.57■□□□□ 0.24
ZNF549Q6P9A3 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF549Q6P9A3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms