Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PEX3P56589 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
PEX3P56589 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
PEX3P56589 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.39■□□□□ 0.53
PEX3P56589 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.39■□□□□ 0.53
PEX3P56589 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.39■□□□□ 0.53
PEX3P56589 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.38■□□□□ 0.53
PEX3P56589 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 PRORSD1P-202ENST00000563365 2154 ntBASIC18.38■□□□□ 0.53
PEX3P56589 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.38■□□□□ 0.53
PEX3P56589 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
PEX3P56589 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.38■□□□□ 0.53
PEX3P56589 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.38■□□□□ 0.53
PEX3P56589 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.38■□□□□ 0.53
PEX3P56589 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
PEX3P56589 AL161645.1-201ENST00000622716 1255 ntBASIC18.38■□□□□ 0.53
PEX3P56589 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.38■□□□□ 0.53
PEX3P56589 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PEX3P56589 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PEX3P56589 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PEX3P56589 AC009053.2-201ENST00000563701 2365 ntBASIC18.38■□□□□ 0.53
PEX3P56589 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
PEX3P56589 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PEX3P56589 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PEX3P56589 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PEX3P56589 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.37■□□□□ 0.53
PEX3P56589 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PEX3P56589 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PEX3P56589 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.37■□□□□ 0.53
PEX3P56589 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
PEX3P56589 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.37■□□□□ 0.53
PEX3P56589 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
PEX3P56589 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.37■□□□□ 0.53
PEX3P56589 AL355306.1-201ENST00000415580 579 ntBASIC18.37■□□□□ 0.53
PEX3P56589 AC211486.1-202ENST00000416371 468 ntBASIC18.37■□□□□ 0.53
PEX3P56589 AL671277.1-201ENST00000429656 993 ntBASIC18.37■□□□□ 0.53
PEX3P56589 ACTG1P14-201ENST00000446382 1122 ntBASIC18.37■□□□□ 0.53
PEX3P56589 HLA-J-202ENST00000469281 1241 ntBASIC18.37■□□□□ 0.53
PEX3P56589 AC211476.1-201ENST00000503899 468 ntBASIC18.37■□□□□ 0.53
PEX3P56589 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
PEX3P56589 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.37■□□□□ 0.53
PEX3P56589 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 AC139530.3-201ENST00000620344 690 ntBASIC18.37■□□□□ 0.53
PEX3P56589 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.37■□□□□ 0.53
PEX3P56589 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.37■□□□□ 0.53
PEX3P56589 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.37■□□□□ 0.53
PEX3P56589 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PEX3P56589 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.37■□□□□ 0.53
PEX3P56589 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.37■□□□□ 0.53
PEX3P56589 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PEX3P56589 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PEX3P56589 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.37■□□□□ 0.53
PEX3P56589 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 549.6 ms