Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.25■□□□□ 0.67
CTCFP49711 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.25■□□□□ 0.67
CTCFP49711 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CTCFP49711 C2orf69P2-201ENST00000562032 1123 ntBASIC19.25■□□□□ 0.67
CTCFP49711 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.25■□□□□ 0.67
CTCFP49711 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.25■□□□□ 0.67
CTCFP49711 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC19.25■□□□□ 0.67
CTCFP49711 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 AC106820.2-201ENST00000563775 3264 ntBASIC19.25■□□□□ 0.67
CTCFP49711 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.25■□□□□ 0.67
CTCFP49711 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CTCFP49711 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.25■□□□□ 0.67
CTCFP49711 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CTCFP49711 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.24■□□□□ 0.67
CTCFP49711 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.24■□□□□ 0.67
CTCFP49711 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
CTCFP49711 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.24■□□□□ 0.67
CTCFP49711 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.24■□□□□ 0.67
CTCFP49711 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.24■□□□□ 0.67
CTCFP49711 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CTCFP49711 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.24■□□□□ 0.67
CTCFP49711 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.24■□□□□ 0.67
CTCFP49711 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.24■□□□□ 0.67
CTCFP49711 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.24■□□□□ 0.67
CTCFP49711 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
CTCFP49711 AC023310.3-201ENST00000557027 670 ntBASIC19.24■□□□□ 0.67
CTCFP49711 AC100756.1-201ENST00000562736 682 ntBASIC19.24■□□□□ 0.67
CTCFP49711 AC138749.3-201ENST00000567691 622 ntBASIC19.24■□□□□ 0.67
CTCFP49711 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.24■□□□□ 0.67
CTCFP49711 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.24■□□□□ 0.67
CTCFP49711 AC026740.1-201ENST00000607068 791 ntBASIC19.24■□□□□ 0.67
CTCFP49711 AC116165.1-201ENST00000611806 668 ntBASIC19.24■□□□□ 0.67
CTCFP49711 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC19.24■□□□□ 0.67
CTCFP49711 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.24■□□□□ 0.67
CTCFP49711 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CTCFP49711 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTCFP49711 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.24■□□□□ 0.67
CTCFP49711 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.24■□□□□ 0.67
CTCFP49711 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.23■□□□□ 0.67
CTCFP49711 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.23■□□□□ 0.67
CTCFP49711 AC006033.1-201ENST00000440505 426 ntBASIC19.23■□□□□ 0.67
CTCFP49711 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.23■□□□□ 0.67
CTCFP49711 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.23■□□□□ 0.67
CTCFP49711 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.23■□□□□ 0.67
CTCFP49711 MIR4706-201ENST00000582134 82 ntBASIC19.23■□□□□ 0.67
CTCFP49711 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CTCFP49711 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.23■□□□□ 0.67
CTCFP49711 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC19.23■□□□□ 0.67
CTCFP49711 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CTCFP49711 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.23■□□□□ 0.67
CTCFP49711 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CTCFP49711 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.23■□□□□ 0.67
CTCFP49711 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CTCFP49711 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTCFP49711 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 AL353732.1-201ENST00000569618 1459 ntBASIC19.22■□□□□ 0.67
CTCFP49711 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CTCFP49711 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms