Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
LHX1P48742 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.64■□□□□ 0.42
LHX1P48742 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.64■□□□□ 0.42
LHX1P48742 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LHX1P48742 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
LHX1P48742 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
LHX1P48742 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 AL139400.1-201ENST00000366220 510 ntBASIC17.64■□□□□ 0.41
LHX1P48742 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.64■□□□□ 0.41
LHX1P48742 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.64■□□□□ 0.41
LHX1P48742 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.64■□□□□ 0.41
LHX1P48742 AC105233.2-201ENST00000523697 349 ntBASIC17.64■□□□□ 0.41
LHX1P48742 AF228730.5-201ENST00000530288 346 ntBASIC17.64■□□□□ 0.41
LHX1P48742 AP000842.3-202ENST00000569238 1080 ntBASIC17.64■□□□□ 0.41
LHX1P48742 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.64■□□□□ 0.41
LHX1P48742 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.64■□□□□ 0.41
LHX1P48742 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
LHX1P48742 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.41
LHX1P48742 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 AC012313.1-201ENST00000593393 3059 ntBASIC17.64■□□□□ 0.41
LHX1P48742 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.64■□□□□ 0.41
LHX1P48742 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LHX1P48742 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.64■□□□□ 0.41
LHX1P48742 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.64■□□□□ 0.41
LHX1P48742 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LHX1P48742 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LHX1P48742 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LHX1P48742 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.63■□□□□ 0.41
LHX1P48742 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
LHX1P48742 FAM58DP-201ENST00000428076 619 ntBASIC17.63■□□□□ 0.41
LHX1P48742 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 AC025678.2-201ENST00000562061 970 ntBASIC17.63■□□□□ 0.41
LHX1P48742 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.63■□□□□ 0.41
LHX1P48742 AC004449.1-201ENST00000564240 433 ntBASIC17.63■□□□□ 0.41
LHX1P48742 AL138918.1-201ENST00000568306 659 ntBASIC17.63■□□□□ 0.41
LHX1P48742 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.63■□□□□ 0.41
LHX1P48742 AC073389.1-201ENST00000595595 795 ntBASIC17.63■□□□□ 0.41
LHX1P48742 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.63■□□□□ 0.41
LHX1P48742 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 LINC00628-201ENST00000628516 1289 ntBASIC17.63■□□□□ 0.41
LHX1P48742 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.63■□□□□ 0.41
LHX1P48742 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LHX1P48742 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LHX1P48742 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LHX1P48742 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX1P48742 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
LHX1P48742 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 AL031731.1-201ENST00000642131 2094 ntBASIC17.62■□□□□ 0.41
LHX1P48742 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LHX1P48742 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 AC026471.1-201ENST00000564629 3026 ntBASIC17.62■□□□□ 0.41
LHX1P48742 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
LHX1P48742 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.62■□□□□ 0.41
LHX1P48742 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 GPAA1P2-202ENST00000606848 1787 ntBASIC17.62■□□□□ 0.41
LHX1P48742 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LHX1P48742 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms