Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.22■□□□□ 0.51
RFX1P22670 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.22■□□□□ 0.51
RFX1P22670 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.22■□□□□ 0.51
RFX1P22670 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
RFX1P22670 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFX1P22670 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFX1P22670 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
RFX1P22670 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFX1P22670 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFX1P22670 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.22■□□□□ 0.51
RFX1P22670 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.22■□□□□ 0.51
RFX1P22670 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
RFX1P22670 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
RFX1P22670 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
RFX1P22670 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.21■□□□□ 0.51
RFX1P22670 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
RFX1P22670 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 AC087163.2-201ENST00000457299 853 ntBASIC18.21■□□□□ 0.51
RFX1P22670 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.21■□□□□ 0.51
RFX1P22670 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.21■□□□□ 0.51
RFX1P22670 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.21■□□□□ 0.51
RFX1P22670 AC091167.2-201ENST00000579581 588 ntBASIC18.21■□□□□ 0.51
RFX1P22670 C20orf181-201ENST00000623918 480 ntBASIC18.21■□□□□ 0.51
RFX1P22670 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.21■□□□□ 0.51
RFX1P22670 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
RFX1P22670 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.21■□□□□ 0.51
RFX1P22670 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RFX1P22670 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX1P22670 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RFX1P22670 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
RFX1P22670 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.2■□□□□ 0.5
RFX1P22670 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RFX1P22670 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 ELK2BP-201ENST00000415014 1224 ntBASIC18.2■□□□□ 0.5
RFX1P22670 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.2■□□□□ 0.5
RFX1P22670 YBX1P5-201ENST00000509441 847 ntBASIC18.2■□□□□ 0.5
RFX1P22670 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.2■□□□□ 0.5
RFX1P22670 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.2■□□□□ 0.5
RFX1P22670 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.2■□□□□ 0.5
RFX1P22670 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFX1P22670 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
RFX1P22670 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.19■□□□□ 0.5
RFX1P22670 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.19■□□□□ 0.5
RFX1P22670 PTCHD3P3-201ENST00000403073 906 ntBASIC18.19■□□□□ 0.5
RFX1P22670 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.19■□□□□ 0.5
RFX1P22670 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.19■□□□□ 0.5
RFX1P22670 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.19■□□□□ 0.5
RFX1P22670 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
RFX1P22670 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.19■□□□□ 0.5
RFX1P22670 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.19■□□□□ 0.5
RFX1P22670 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.19■□□□□ 0.5
RFX1P22670 REXO1L3P-201ENST00000622202 1288 ntBASIC18.19■□□□□ 0.5
RFX1P22670 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.19■□□□□ 0.5
RFX1P22670 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
RFX1P22670 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.19■□□□□ 0.5
RFX1P22670 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.19■□□□□ 0.5
RFX1P22670 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX1P22670 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.18■□□□□ 0.5
RFX1P22670 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX1P22670 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RFX1P22670 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX1P22670 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX1P22670 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX1P22670 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RFX1P22670 KRT18P27-201ENST00000427733 1299 ntBASIC18.18■□□□□ 0.5
RFX1P22670 KRT18P2-201ENST00000447938 1258 ntBASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms