Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.49■□□□□ 0.55
TPM1P09493 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.49■□□□□ 0.55
TPM1P09493 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.49■□□□□ 0.55
TPM1P09493 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.49■□□□□ 0.55
TPM1P09493 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.49■□□□□ 0.55
TPM1P09493 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.49■□□□□ 0.55
TPM1P09493 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
TPM1P09493 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
TPM1P09493 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TPM1P09493 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TPM1P09493 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.49■□□□□ 0.55
TPM1P09493 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.49■□□□□ 0.55
TPM1P09493 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM1P09493 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.48■□□□□ 0.55
TPM1P09493 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.48■□□□□ 0.55
TPM1P09493 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.48■□□□□ 0.55
TPM1P09493 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.48■□□□□ 0.55
TPM1P09493 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 AC099063.4-201ENST00000641099 1602 ntBASIC18.48■□□□□ 0.55
TPM1P09493 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM1P09493 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC18.48■□□□□ 0.55
TPM1P09493 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM1P09493 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TPM1P09493 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TPM1P09493 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM1P09493 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM1P09493 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM1P09493 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TPM1P09493 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.47■□□□□ 0.55
TPM1P09493 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.47■□□□□ 0.55
TPM1P09493 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
TPM1P09493 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM1P09493 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms