Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXC4P09017 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC4P09017 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC4P09017 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 AL589702.1-201ENST00000641229 1509 ntBASIC16.19■□□□□ 0.18
HOXC4P09017 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 AC005915.1-201ENST00000624912 2018 ntBASIC16.19■□□□□ 0.18
HOXC4P09017 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.19■□□□□ 0.18
HOXC4P09017 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
HOXC4P09017 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 BASP1P1-201ENST00000430708 665 ntBASIC16.19■□□□□ 0.18
HOXC4P09017 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.19■□□□□ 0.18
HOXC4P09017 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.19■□□□□ 0.18
HOXC4P09017 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC4P09017 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC4P09017 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC4P09017 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC4P09017 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.19■□□□□ 0.18
HOXC4P09017 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC4P09017 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.19■□□□□ 0.18
HOXC4P09017 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.19■□□□□ 0.18
HOXC4P09017 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC4P09017 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HOXC4P09017 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 GGT3P-204ENST00000453783 1664 ntBASIC16.18■□□□□ 0.18
HOXC4P09017 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HOXC4P09017 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.18■□□□□ 0.18
HOXC4P09017 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.18■□□□□ 0.18
HOXC4P09017 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC4P09017 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 AL353705.2-201ENST00000428243 662 ntBASIC16.18■□□□□ 0.18
HOXC4P09017 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.18■□□□□ 0.18
HOXC4P09017 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.18■□□□□ 0.18
HOXC4P09017 BCRP1-201ENST00000444246 691 ntBASIC16.18■□□□□ 0.18
HOXC4P09017 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.18■□□□□ 0.18
HOXC4P09017 AC097493.3-201ENST00000509725 367 ntBASIC16.18■□□□□ 0.18
HOXC4P09017 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC4P09017 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.18■□□□□ 0.18
HOXC4P09017 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HOXC4P09017 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.18■□□□□ 0.18
HOXC4P09017 MIR3197-201ENST00000582241 73 ntBASIC16.18■□□□□ 0.18
HOXC4P09017 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.18■□□□□ 0.18
HOXC4P09017 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
HOXC4P09017 AC003101.2-201ENST00000612557 442 ntBASIC16.18■□□□□ 0.18
HOXC4P09017 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC4P09017 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HOXC4P09017 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC4P09017 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HOXC4P09017 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC4P09017 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC4P09017 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.18■□□□□ 0.18
HOXC4P09017 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
HOXC4P09017 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.17■□□□□ 0.18
HOXC4P09017 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC4P09017 FO538757.1-201ENST00000623083 1397 ntBASIC16.17■□□□□ 0.18
HOXC4P09017 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HOXC4P09017 PCGF3-213ENST00000620529 1899 ntBASIC16.17■□□□□ 0.18
HOXC4P09017 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms