Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.29□□□□□ -0.12
SDCBPO00560 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
SDCBPO00560 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.29□□□□□ -0.12
SDCBPO00560 SRP19-202ENST00000445150 833 ntTSL 2 BASIC14.29□□□□□ -0.12
SDCBPO00560 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.29□□□□□ -0.12
SDCBPO00560 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SDCBPO00560 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 TUBB8P12-201ENST00000308911 1335 ntBASIC14.28□□□□□ -0.12
SDCBPO00560 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SDCBPO00560 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.28□□□□□ -0.12
SDCBPO00560 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 TUBB7P-202ENST00000428444 1305 ntBASIC14.28□□□□□ -0.12
SDCBPO00560 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.28□□□□□ -0.12
SDCBPO00560 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SDCBPO00560 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.28□□□□□ -0.12
SDCBPO00560 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.28□□□□□ -0.12
SDCBPO00560 TUBB8P7-204ENST00000567960 1332 ntBASIC14.28□□□□□ -0.12
SDCBPO00560 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SDCBPO00560 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.28□□□□□ -0.12
SDCBPO00560 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.28□□□□□ -0.12
SDCBPO00560 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.28□□□□□ -0.12
SDCBPO00560 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDCBPO00560 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.27□□□□□ -0.12
SDCBPO00560 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.27□□□□□ -0.12
SDCBPO00560 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
SDCBPO00560 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.27□□□□□ -0.12
SDCBPO00560 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
SDCBPO00560 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDCBPO00560 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
SDCBPO00560 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.27□□□□□ -0.12
SDCBPO00560 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC14.27□□□□□ -0.13
SDCBPO00560 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.27□□□□□ -0.13
SDCBPO00560 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms