Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 SPCS2P4-201ENST00000436160 681 ntBASIC16.8■□□□□ 0.28
LHX3Q9UBR4 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 KRT18P34-201ENST00000488218 1270 ntBASIC16.8■□□□□ 0.28
LHX3Q9UBR4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 AP000344.2-201ENST00000512987 629 ntBASIC16.8■□□□□ 0.28
LHX3Q9UBR4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 AP001160.2-201ENST00000596071 487 ntBASIC16.8■□□□□ 0.28
LHX3Q9UBR4 AL596442.2-201ENST00000610240 980 ntBASIC16.8■□□□□ 0.28
LHX3Q9UBR4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 AL138918.1-201ENST00000568306 659 ntBASIC16.79■□□□□ 0.28
LHX3Q9UBR4 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX3Q9UBR4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 CNN2P11-201ENST00000429351 262 ntBASIC16.78■□□□□ 0.28
LHX3Q9UBR4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 AC093520.2-201ENST00000561830 333 ntBASIC16.78■□□□□ 0.28
LHX3Q9UBR4 LINC01225-203ENST00000563550 1244 ntBASIC16.78■□□□□ 0.28
LHX3Q9UBR4 AC027612.4-201ENST00000605371 583 ntBASIC16.78■□□□□ 0.28
LHX3Q9UBR4 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LHX3Q9UBR4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms