Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSU72Q9NP77 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.62■□□□□ 0.25
SSU72Q9NP77 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.62■□□□□ 0.25
SSU72Q9NP77 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSU72Q9NP77 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSU72Q9NP77 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SSU72Q9NP77 AC016027.1-202ENST00000607927 1699 ntBASIC16.62■□□□□ 0.25
SSU72Q9NP77 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
SSU72Q9NP77 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.62■□□□□ 0.25
SSU72Q9NP77 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSU72Q9NP77 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSU72Q9NP77 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSU72Q9NP77 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SSU72Q9NP77 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSU72Q9NP77 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 AC063952.2-201ENST00000498792 1227 ntBASIC16.61■□□□□ 0.25
SSU72Q9NP77 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 AC010331.1-201ENST00000611423 582 ntBASIC16.61■□□□□ 0.25
SSU72Q9NP77 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSU72Q9NP77 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.61■□□□□ 0.25
SSU72Q9NP77 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 AC079776.2-201ENST00000641154 1609 ntBASIC16.6■□□□□ 0.25
SSU72Q9NP77 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 AC005521.1-201ENST00000393351 872 ntBASIC16.6■□□□□ 0.25
SSU72Q9NP77 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 AL136038.3-201ENST00000561909 1096 ntBASIC16.6■□□□□ 0.25
SSU72Q9NP77 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSU72Q9NP77 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SSU72Q9NP77 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SSU72Q9NP77 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.59■□□□□ 0.25
SSU72Q9NP77 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.59■□□□□ 0.25
SSU72Q9NP77 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
SSU72Q9NP77 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSU72Q9NP77 RCN1P2-201ENST00000398357 915 ntBASIC16.59■□□□□ 0.25
SSU72Q9NP77 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.59■□□□□ 0.25
SSU72Q9NP77 AL596275.1-201ENST00000423464 877 ntBASIC16.59■□□□□ 0.25
SSU72Q9NP77 CHCHD2P8-201ENST00000429873 447 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms