Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 GNRHR2-203ENST00000581100 1187 ntBASIC15.29■□□□□ 0.04
CHD8Q9HCK8 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC15.29■□□□□ 0.04
CHD8Q9HCK8 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHD8Q9HCK8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 ENPP7P5-201ENST00000541031 1031 ntBASIC15.28■□□□□ 0.04
CHD8Q9HCK8 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 AP001505.2-201ENST00000616815 443 ntBASIC15.28■□□□□ 0.04
CHD8Q9HCK8 MIR6069-201ENST00000620069 79 ntBASIC15.28■□□□□ 0.04
CHD8Q9HCK8 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 REXO1L9P-201ENST00000604264 2108 ntBASIC15.28■□□□□ 0.04
CHD8Q9HCK8 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.28■□□□□ 0.04
CHD8Q9HCK8 FGFR3P5-201ENST00000564496 886 ntBASIC15.28■□□□□ 0.04
CHD8Q9HCK8 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 AC018735.1-201ENST00000437208 1502 ntBASIC15.27■□□□□ 0.04
CHD8Q9HCK8 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 MTX1P1-201ENST00000440904 838 ntBASIC15.27■□□□□ 0.04
CHD8Q9HCK8 AC126915.1-201ENST00000522847 1038 ntBASIC15.27■□□□□ 0.04
CHD8Q9HCK8 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHD8Q9HCK8 AL096828.3-201ENST00000615354 462 ntBASIC15.27■□□□□ 0.04
CHD8Q9HCK8 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHD8Q9HCK8 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHD8Q9HCK8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHD8Q9HCK8 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.26■□□□□ 0.03
CHD8Q9HCK8 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.26■□□□□ 0.03
CHD8Q9HCK8 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
CHD8Q9HCK8 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
CHD8Q9HCK8 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHD8Q9HCK8 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms