Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 AL158211.3-201ENST00000607385 239 ntBASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 BCL2-203ENST00000589955 5011 ntBASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 AC138761.1-201ENST00000584393 385 ntBASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 AC003101.2-201ENST00000612557 442 ntBASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 RNF216P1-203ENST00000404404 2427 ntBASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PAAF1Q9BRP4 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.72■□□□□ 0.43
PAAF1Q9BRP4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms