Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 USB1-202ENST00000423271 1217 ntTSL 2 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 WFDC1-204ENST00000613603 549 ntBASIC11.47□□□□□ -0.57
CSMD3Q7Z407 PPA1-206ENST00000625364 644 ntTSL 5 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 RBM39-205ENST00000397370 612 ntTSL 2 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 CDK2AP2P3-201ENST00000422476 372 ntBASIC11.47□□□□□ -0.57
CSMD3Q7Z407 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 AC114501.2-201ENST00000439631 535 ntBASIC11.47□□□□□ -0.57
CSMD3Q7Z407 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC11.47□□□□□ -0.57
CSMD3Q7Z407 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 RPS19-201ENST00000221975 500 ntTSL 3 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 TPRX2P-201ENST00000535362 881 ntBASIC11.46□□□□□ -0.57
CSMD3Q7Z407 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 AC133552.6-201ENST00000613406 534 ntBASIC11.46□□□□□ -0.57
CSMD3Q7Z407 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 FLJ13224-201ENST00000313737 1514 ntBASIC11.46□□□□□ -0.57
CSMD3Q7Z407 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 AMT-232ENST00000636199 1546 ntTSL 5 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 AC123567.1-201ENST00000548294 1261 ntBASIC11.46□□□□□ -0.57
CSMD3Q7Z407 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC11.46□□□□□ -0.57
CSMD3Q7Z407 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 AL021578.1-201ENST00000613646 709 ntBASIC11.46□□□□□ -0.58
CSMD3Q7Z407 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 AC133963.1-201ENST00000504166 1679 ntBASIC11.46□□□□□ -0.58
CSMD3Q7Z407 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
CSMD3Q7Z407 AC092053.1-201ENST00000605787 1936 ntBASIC11.46□□□□□ -0.58
CSMD3Q7Z407 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CSMD3Q7Z407 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms