Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.68□□□□□ -0.06
TFF3Q07654 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
TFF3Q07654 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.68□□□□□ -0.06
TFF3Q07654 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.68□□□□□ -0.06
TFF3Q07654 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.68□□□□□ -0.06
TFF3Q07654 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.68□□□□□ -0.06
TFF3Q07654 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.68□□□□□ -0.06
TFF3Q07654 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.68□□□□□ -0.06
TFF3Q07654 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.68□□□□□ -0.06
TFF3Q07654 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.68□□□□□ -0.06
TFF3Q07654 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.68□□□□□ -0.06
TFF3Q07654 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.68□□□□□ -0.06
TFF3Q07654 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.68□□□□□ -0.06
TFF3Q07654 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.68□□□□□ -0.06
TFF3Q07654 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.68□□□□□ -0.06
TFF3Q07654 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
TFF3Q07654 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.68□□□□□ -0.06
TFF3Q07654 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
TFF3Q07654 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TFF3Q07654 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.67□□□□□ -0.06
TFF3Q07654 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.67□□□□□ -0.06
TFF3Q07654 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
TFF3Q07654 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
TFF3Q07654 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.67□□□□□ -0.06
TFF3Q07654 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.67□□□□□ -0.06
TFF3Q07654 AL138918.1-201ENST00000568306 659 ntBASIC14.67□□□□□ -0.06
TFF3Q07654 SPDYE22P-201ENST00000582158 798 ntBASIC14.67□□□□□ -0.06
TFF3Q07654 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TFF3Q07654 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.67□□□□□ -0.06
TFF3Q07654 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 AC100757.3-201ENST00000622361 1406 ntBASIC14.66□□□□□ -0.06
TFF3Q07654 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC14.66□□□□□ -0.06
TFF3Q07654 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
TFF3Q07654 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
TFF3Q07654 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
TFF3Q07654 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.66□□□□□ -0.06
TFF3Q07654 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
TFF3Q07654 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.66□□□□□ -0.06
TFF3Q07654 EGFEM1P-202ENST00000431685 1563 ntBASIC14.66□□□□□ -0.06
TFF3Q07654 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
TFF3Q07654 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.66□□□□□ -0.06
TFF3Q07654 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TFF3Q07654 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
TFF3Q07654 TSSK5P-201ENST00000423978 907 ntBASIC14.66□□□□□ -0.06
TFF3Q07654 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.66□□□□□ -0.06
TFF3Q07654 AC142381.1-201ENST00000426099 345 ntBASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms