Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
CDH4P55283 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH4P55283 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDH4P55283 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH4P55283 TIMM8BP1-201ENST00000452384 211 ntBASIC17.07■□□□□ 0.32
CDH4P55283 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH4P55283 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.07■□□□□ 0.32
CDH4P55283 KRT18P34-201ENST00000488218 1270 ntBASIC17.07■□□□□ 0.32
CDH4P55283 KRT8P48-201ENST00000515599 1220 ntBASIC17.07■□□□□ 0.32
CDH4P55283 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH4P55283 SNHG9-202ENST00000564014 471 ntBASIC17.07■□□□□ 0.32
CDH4P55283 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH4P55283 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.07■□□□□ 0.32
CDH4P55283 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH4P55283 AP001160.2-201ENST00000596071 487 ntBASIC17.07■□□□□ 0.32
CDH4P55283 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH4P55283 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH4P55283 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.07■□□□□ 0.32
CDH4P55283 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CDH4P55283 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CDH4P55283 AC106886.4-201ENST00000623557 2502 ntBASIC17.06■□□□□ 0.32
CDH4P55283 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH4P55283 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 CNN2P11-201ENST00000429351 262 ntBASIC17.06■□□□□ 0.32
CDH4P55283 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH4P55283 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH4P55283 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 AC243562.1-201ENST00000560672 389 ntBASIC17.06■□□□□ 0.32
CDH4P55283 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 AC022145.2-201ENST00000598203 171 ntBASIC17.06■□□□□ 0.32
CDH4P55283 AL596442.2-201ENST00000610240 980 ntBASIC17.06■□□□□ 0.32
CDH4P55283 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH4P55283 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH4P55283 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
CDH4P55283 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH4P55283 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH4P55283 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH4P55283 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH4P55283 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH4P55283 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 AC004461.1-201ENST00000412461 403 ntBASIC17.05■□□□□ 0.32
CDH4P55283 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH4P55283 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 AC079140.1-201ENST00000508039 487 ntBASIC17.05■□□□□ 0.32
CDH4P55283 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.05■□□□□ 0.32
CDH4P55283 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDH4P55283 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CDH4P55283 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH4P55283 AC004835.2-201ENST00000603762 682 ntBASIC17.05■□□□□ 0.32
CDH4P55283 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH4P55283 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH4P55283 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH4P55283 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 AD000864.1-201ENST00000624076 2295 ntBASIC17.05■□□□□ 0.32
CDH4P55283 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH4P55283 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms