Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.54■■□□□ 1.04
RXRBP28702 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
RXRBP28702 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC21.54■■□□□ 1.04
RXRBP28702 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RXRBP28702 AC012441.1-201ENST00000446669 685 ntBASIC21.54■■□□□ 1.04
RXRBP28702 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC21.54■■□□□ 1.04
RXRBP28702 AC106760.1-201ENST00000508690 800 ntBASIC21.54■■□□□ 1.04
RXRBP28702 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RXRBP28702 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC21.54■■□□□ 1.04
RXRBP28702 AC104982.3-201ENST00000581995 514 ntBASIC21.54■■□□□ 1.04
RXRBP28702 KLK3-207ENST00000595952 969 ntTSL 3 BASIC21.54■■□□□ 1.04
RXRBP28702 NDUFV2P1-201ENST00000596415 907 ntBASIC21.54■■□□□ 1.04
RXRBP28702 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC21.54■■□□□ 1.04
RXRBP28702 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RXRBP28702 CU633904.3-201ENST00000624042 1029 ntBASIC21.54■■□□□ 1.04
RXRBP28702 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC21.54■■□□□ 1.04
RXRBP28702 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RXRBP28702 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.54■■□□□ 1.04
RXRBP28702 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RXRBP28702 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RXRBP28702 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.54■■□□□ 1.04
RXRBP28702 KRT8P37-201ENST00000451609 1420 ntBASIC21.54■■□□□ 1.04
RXRBP28702 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.54■■□□□ 1.04
RXRBP28702 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.53■■□□□ 1.04
RXRBP28702 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC21.53■■□□□ 1.04
RXRBP28702 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.53■■□□□ 1.04
RXRBP28702 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC21.53■■□□□ 1.04
RXRBP28702 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 SNX21-203ENST00000372541 771 ntTSL 2 BASIC21.53■■□□□ 1.04
RXRBP28702 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
RXRBP28702 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
RXRBP28702 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC21.53■■□□□ 1.04
RXRBP28702 PTK7-212ENST00000476760 902 ntTSL 2 BASIC21.53■■□□□ 1.04
RXRBP28702 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC21.53■■□□□ 1.04
RXRBP28702 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC21.53■■□□□ 1.04
RXRBP28702 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.53■■□□□ 1.04
RXRBP28702 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.53■■□□□ 1.04
RXRBP28702 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 AHCYP2-201ENST00000430630 1300 ntBASIC21.53■■□□□ 1.04
RXRBP28702 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RXRBP28702 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RXRBP28702 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
RXRBP28702 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RXRBP28702 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RXRBP28702 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RXRBP28702 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RXRBP28702 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
RXRBP28702 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.52■■□□□ 1.04
RXRBP28702 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
RXRBP28702 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RXRBP28702 HNRNPA1P32-201ENST00000396326 963 ntBASIC21.52■■□□□ 1.04
RXRBP28702 KRTAP10-13P-201ENST00000412914 571 ntBASIC21.52■■□□□ 1.04
RXRBP28702 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC21.52■■□□□ 1.04
RXRBP28702 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC21.52■■□□□ 1.04
RXRBP28702 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC21.52■■□□□ 1.04
RXRBP28702 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RXRBP28702 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC21.52■■□□□ 1.04
RXRBP28702 LARP4-220ENST00000615080 856 ntTSL 5 BASIC21.52■■□□□ 1.04
RXRBP28702 AL158212.4-201ENST00000624062 1286 ntBASIC21.52■■□□□ 1.04
RXRBP28702 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.52■■□□□ 1.04
RXRBP28702 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RXRBP28702 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RXRBP28702 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC21.52■■□□□ 1.04
RXRBP28702 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RXRBP28702 LYSMD4-203ENST00000378904 2122 ntBASIC21.52■■□□□ 1.03
RXRBP28702 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
RXRBP28702 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
RXRBP28702 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
RXRBP28702 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC21.51■■□□□ 1.03
RXRBP28702 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
RXRBP28702 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC21.51■■□□□ 1.03
RXRBP28702 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC21.51■■□□□ 1.03
RXRBP28702 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC21.51■■□□□ 1.03
RXRBP28702 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC21.51■■□□□ 1.03
RXRBP28702 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.51■■□□□ 1.03
RXRBP28702 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.51■■□□□ 1.03
RXRBP28702 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RXRBP28702 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
RXRBP28702 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
RXRBP28702 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms