Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 HMGA1P7-201ENST00000406908 502 ntBASIC19.72■□□□□ 0.75
HMGB1P09429 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.72■□□□□ 0.75
HMGB1P09429 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.72■□□□□ 0.75
HMGB1P09429 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.72■□□□□ 0.75
HMGB1P09429 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.72■□□□□ 0.75
HMGB1P09429 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.72■□□□□ 0.75
HMGB1P09429 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HMGB1P09429 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.71■□□□□ 0.75
HMGB1P09429 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.71■□□□□ 0.75
HMGB1P09429 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
HMGB1P09429 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 CYP2T1P-202ENST00000641596 2535 ntBASIC19.71■□□□□ 0.75
HMGB1P09429 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.71■□□□□ 0.75
HMGB1P09429 LINC01144-201ENST00000626198 1710 ntBASIC19.71■□□□□ 0.75
HMGB1P09429 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.71■□□□□ 0.75
HMGB1P09429 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HMGB1P09429 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
HMGB1P09429 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
HMGB1P09429 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.71■□□□□ 0.75
HMGB1P09429 AC020765.3-201ENST00000613051 740 ntBASIC19.71■□□□□ 0.75
HMGB1P09429 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.71■□□□□ 0.75
HMGB1P09429 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.71■□□□□ 0.75
HMGB1P09429 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.71■□□□□ 0.75
HMGB1P09429 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
HMGB1P09429 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB1P09429 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGB1P09429 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 RNU1-129P-201ENST00000384064 167 ntBASIC19.7■□□□□ 0.74
HMGB1P09429 PMS2P4-201ENST00000412466 1052 ntBASIC19.7■□□□□ 0.74
HMGB1P09429 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HMGB1P09429 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 AC034105.1-201ENST00000563488 319 ntBASIC19.7■□□□□ 0.74
HMGB1P09429 U1.21-201ENST00000580816 167 ntBASIC19.7■□□□□ 0.74
HMGB1P09429 AC021097.1-201ENST00000607902 574 ntBASIC19.7■□□□□ 0.74
HMGB1P09429 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
HMGB1P09429 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HMGB1P09429 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
HMGB1P09429 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HMGB1P09429 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGB1P09429 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGB1P09429 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB1P09429 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HMGB1P09429 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 AC104109.2-201ENST00000602919 1418 ntBASIC19.69■□□□□ 0.74
HMGB1P09429 PCGF3-213ENST00000620529 1899 ntBASIC19.69■□□□□ 0.74
HMGB1P09429 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB1P09429 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB1P09429 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HMGB1P09429 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HMGB1P09429 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB1P09429 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.69■□□□□ 0.74
HMGB1P09429 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.69■□□□□ 0.74
HMGB1P09429 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.69■□□□□ 0.74
HMGB1P09429 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms