Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.26■□□□□ 0.19
LDLRP01130 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDLRP01130 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
LDLRP01130 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDLRP01130 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
LDLRP01130 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDLRP01130 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDLRP01130 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LDLRP01130 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDLRP01130 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDLRP01130 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDLRP01130 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDLRP01130 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
LDLRP01130 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.25■□□□□ 0.19
LDLRP01130 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
LDLRP01130 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LDLRP01130 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
LDLRP01130 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.25■□□□□ 0.19
LDLRP01130 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 RPS8P6-201ENST00000426177 609 ntBASIC16.25■□□□□ 0.19
LDLRP01130 AL591424.1-201ENST00000442569 1213 ntBASIC16.25■□□□□ 0.19
LDLRP01130 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LDLRP01130 AC124947.2-201ENST00000547118 1133 ntBASIC16.25■□□□□ 0.19
LDLRP01130 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.25■□□□□ 0.19
LDLRP01130 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.25■□□□□ 0.19
LDLRP01130 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LDLRP01130 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.25■□□□□ 0.19
LDLRP01130 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.25■□□□□ 0.19
LDLRP01130 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LDLRP01130 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDLRP01130 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
LDLRP01130 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
LDLRP01130 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 AC132872.4-202ENST00000622924 2756 ntBASIC16.24■□□□□ 0.19
LDLRP01130 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.24■□□□□ 0.19
LDLRP01130 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.24■□□□□ 0.19
LDLRP01130 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
LDLRP01130 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.24■□□□□ 0.19
LDLRP01130 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.24■□□□□ 0.19
LDLRP01130 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.24■□□□□ 0.19
LDLRP01130 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.24■□□□□ 0.19
LDLRP01130 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.24■□□□□ 0.19
LDLRP01130 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 HYMAI-201ENST00000635591 3347 ntBASIC16.24■□□□□ 0.19
LDLRP01130 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.24■□□□□ 0.19
LDLRP01130 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDLRP01130 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.24■□□□□ 0.19
LDLRP01130 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.24■□□□□ 0.19
LDLRP01130 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
LDLRP01130 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
LDLRP01130 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
LDLRP01130 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms