Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 PMS2P4-201ENST00000412466 1052 ntBASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 AC078925.2-201ENST00000624013 1973 ntBASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PDZRN3Q9UPQ7 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 AL590787.1-201ENST00000568856 1315 ntBASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 AL627223.1-201ENST00000416693 442 ntBASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 AC026120.1-201ENST00000611536 926 ntBASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
PDZRN3Q9UPQ7 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.04
PDZRN3Q9UPQ7 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
PDZRN3Q9UPQ7 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC21.58■■□□□ 1.04
PDZRN3Q9UPQ7 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
PDZRN3Q9UPQ7 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
PDZRN3Q9UPQ7 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 AL135999.2-201ENST00000622438 1686 ntBASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDZRN3Q9UPQ7 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.56■■□□□ 1.04
PDZRN3Q9UPQ7 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms