Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 AL035456.1-201ENST00000456064 1369 ntBASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC31.53■■■□□ 2.64
SHROOM4Q9ULL8 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 AC004945.1-201ENST00000416738 983 ntBASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 CDK2AP2P3-201ENST00000422476 372 ntBASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 KRT17P8-201ENST00000540749 863 ntBASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 SPTSSB-204ENST00000617024 1292 ntBASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC31.52■■■□□ 2.64
SHROOM4Q9ULL8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
SHROOM4Q9ULL8 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC31.51■■■□□ 2.64
SHROOM4Q9ULL8 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
SHROOM4Q9ULL8 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
SHROOM4Q9ULL8 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC31.51■■■□□ 2.64
SHROOM4Q9ULL8 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC31.51■■■□□ 2.64
SHROOM4Q9ULL8 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC31.51■■■□□ 2.64
SHROOM4Q9ULL8 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC31.51■■■□□ 2.64
SHROOM4Q9ULL8 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 AC093004.1-201ENST00000508850 424 ntBASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 AC132938.2-201ENST00000579188 680 ntBASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 AL591163.1-201ENST00000641757 987 ntBASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 SLC9A3P2-201ENST00000447821 2021 ntBASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC31.51■■■□□ 2.63
SHROOM4Q9ULL8 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 MXI1-205ENST00000393134 889 ntTSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 RAB43P1-201ENST00000561790 589 ntBASIC31.5■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms