Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 NKAPP1-205ENST00000585790 367 ntBASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 AL162727.3-201ENST00000635661 2787 ntBASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 AC132872.4-202ENST00000622924 2756 ntBASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 KRT16P4-201ENST00000453883 522 ntBASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 AL353135.1-201ENST00000606729 504 ntBASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 AC243591.1-201ENST00000452967 1364 ntBASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM56Q9BRZ2 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
TRIM56Q9BRZ2 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.34
TRIM56Q9BRZ2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.34
TRIM56Q9BRZ2 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
TRIM56Q9BRZ2 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
TRIM56Q9BRZ2 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.14■□□□□ 0.34
TRIM56Q9BRZ2 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 AC106795.1-205ENST00000512851 1056 ntBASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM56Q9BRZ2 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms