Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC004706.3-202ENST00000621574 984 ntBASIC16.14■□□□□ 0.17
VMP1Q96GC9 AC116407.3-201ENST00000623905 1129 ntBASIC16.14■□□□□ 0.17
VMP1Q96GC9 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 IL9RP2-201ENST00000423948 1312 ntBASIC16.14■□□□□ 0.17
VMP1Q96GC9 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VMP1Q96GC9 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.14■□□□□ 0.17
VMP1Q96GC9 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 LYSMD4-203ENST00000378904 2122 ntBASIC16.13■□□□□ 0.17
VMP1Q96GC9 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 ACTG1P4-201ENST00000425123 1122 ntBASIC16.13■□□□□ 0.17
VMP1Q96GC9 AC092910.1-201ENST00000482027 1129 ntBASIC16.13■□□□□ 0.17
VMP1Q96GC9 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 AC012640.2-201ENST00000561606 901 ntBASIC16.13■□□□□ 0.17
VMP1Q96GC9 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 AL139424.1-201ENST00000607572 797 ntBASIC16.13■□□□□ 0.17
VMP1Q96GC9 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.13■□□□□ 0.17
VMP1Q96GC9 PGM5P2-202ENST00000637225 1043 ntBASIC16.13■□□□□ 0.17
VMP1Q96GC9 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 AC092850.2-201ENST00000623821 2697 ntBASIC16.13■□□□□ 0.17
VMP1Q96GC9 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VMP1Q96GC9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VMP1Q96GC9 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 LINC00982-205ENST00000420957 435 ntBASIC16.12■□□□□ 0.17
VMP1Q96GC9 KRT18P27-201ENST00000427733 1299 ntBASIC16.12■□□□□ 0.17
VMP1Q96GC9 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VMP1Q96GC9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VMP1Q96GC9 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms