Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 FOSL1P1-201ENST00000511041 816 ntBASIC15.11■□□□□ 0.01
PTP4A1Q93096 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 AL353135.1-201ENST00000606729 504 ntBASIC15.11■□□□□ 0.01
PTP4A1Q93096 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTP4A1Q93096 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PTP4A1Q93096 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 NUS1P2-201ENST00000417358 873 ntBASIC15.1■□□□□ 0.01
PTP4A1Q93096 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 KRT18P56-201ENST00000507275 550 ntBASIC15.1■□□□□ 0.01
PTP4A1Q93096 PRELID1P1-202ENST00000567272 903 ntBASIC15.1■□□□□ 0.01
PTP4A1Q93096 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 AC138894.3-201ENST00000603787 634 ntBASIC15.1■□□□□ 0.01
PTP4A1Q93096 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PTP4A1Q93096 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTP4A1Q93096 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.09■□□□□ 0.01
PTP4A1Q93096 AP005117.1-201ENST00000584346 1413 ntBASIC15.09■□□□□ 0.01
PTP4A1Q93096 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.09■□□□□ 0.01
PTP4A1Q93096 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.09■□□□□ 0.01
PTP4A1Q93096 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.09■□□□□ 0.01
PTP4A1Q93096 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
PTP4A1Q93096 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.09■□□□□ 0.01
PTP4A1Q93096 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTP4A1Q93096 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.09■□□□□ 0.01
PTP4A1Q93096 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
PTP4A1Q93096 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms