Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 KRT8P39-201ENST00000396270 1433 ntBASIC20.7■□□□□ 0.9
SYNE4Q8N205 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE4Q8N205 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE4Q8N205 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 AC009407.1-201ENST00000568958 598 ntBASIC20.68■□□□□ 0.9
SYNE4Q8N205 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.68■□□□□ 0.9
SYNE4Q8N205 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE4Q8N205 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 RPL37AP1-201ENST00000412502 279 ntBASIC20.67■□□□□ 0.9
SYNE4Q8N205 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 AC004233.3-201ENST00000607794 1269 ntBASIC20.67■□□□□ 0.9
SYNE4Q8N205 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE4Q8N205 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SYNE4Q8N205 AL391256.1-201ENST00000443260 1855 ntBASIC20.67■□□□□ 0.9
SYNE4Q8N205 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 HLA-H-201ENST00000383620 1096 ntBASIC20.66■□□□□ 0.9
SYNE4Q8N205 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.66■□□□□ 0.9
SYNE4Q8N205 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms