Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC12.65□□□□□ -0.38
FOXA3P55318 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC12.65□□□□□ -0.38
FOXA3P55318 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 AC009947.2-201ENST00000444014 672 ntBASIC12.65□□□□□ -0.38
FOXA3P55318 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC12.65□□□□□ -0.38
FOXA3P55318 AC107956.1-201ENST00000494359 873 ntBASIC12.65□□□□□ -0.38
FOXA3P55318 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 EMC9-206ENST00000560403 872 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 NT5C-210ENST00000582160 860 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC12.65□□□□□ -0.38
FOXA3P55318 AC004263.2-201ENST00000617183 678 ntBASIC12.65□□□□□ -0.38
FOXA3P55318 AC113410.3-201ENST00000623366 203 ntBASIC12.65□□□□□ -0.38
FOXA3P55318 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC12.65□□□□□ -0.38
FOXA3P55318 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
FOXA3P55318 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 AL603832.2-201ENST00000566195 2125 ntBASIC12.65□□□□□ -0.38
FOXA3P55318 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.65□□□□□ -0.38
FOXA3P55318 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
FOXA3P55318 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
FOXA3P55318 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
FOXA3P55318 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.65□□□□□ -0.39
FOXA3P55318 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
FOXA3P55318 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
FOXA3P55318 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
FOXA3P55318 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
FOXA3P55318 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.65□□□□□ -0.39
FOXA3P55318 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.39
FOXA3P55318 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.64□□□□□ -0.39
FOXA3P55318 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
FOXA3P55318 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
FOXA3P55318 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 AL596087.1-201ENST00000400979 1969 ntBASIC12.64□□□□□ -0.39
FOXA3P55318 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
FOXA3P55318 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 ABHD17AP1-201ENST00000358206 933 ntBASIC12.64□□□□□ -0.39
FOXA3P55318 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
FOXA3P55318 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
FOXA3P55318 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC12.64□□□□□ -0.39
FOXA3P55318 AC068472.1-201ENST00000474589 881 ntBASIC12.64□□□□□ -0.39
FOXA3P55318 PENK-204ENST00000518770 863 ntTSL 2 BASIC12.64□□□□□ -0.39
FOXA3P55318 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC12.64□□□□□ -0.39
FOXA3P55318 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC12.64□□□□□ -0.39
FOXA3P55318 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC12.64□□□□□ -0.39
FOXA3P55318 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
FOXA3P55318 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC12.64□□□□□ -0.39
FOXA3P55318 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.64□□□□□ -0.39
FOXA3P55318 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
FOXA3P55318 AC010460.3-201ENST00000511359 1579 ntBASIC12.64□□□□□ -0.39
FOXA3P55318 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 AC006058.4-201ENST00000624016 1670 ntBASIC12.64□□□□□ -0.39
FOXA3P55318 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
FOXA3P55318 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA3P55318 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA3P55318 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 FUT8-AS1-201ENST00000621019 1521 ntBASIC12.63□□□□□ -0.39
FOXA3P55318 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA3P55318 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
FOXA3P55318 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms