Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
RFX3P48380 AC006504.4-201ENST00000592118 1568 ntBASIC15.82■□□□□ 0.12
RFX3P48380 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
RFX3P48380 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 PI4KAP1-204ENST00000612579 1703 ntBASIC15.82■□□□□ 0.12
RFX3P48380 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
RFX3P48380 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
RFX3P48380 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
RFX3P48380 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
RFX3P48380 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.81■□□□□ 0.12
RFX3P48380 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.81■□□□□ 0.12
RFX3P48380 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
RFX3P48380 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.81■□□□□ 0.12
RFX3P48380 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.81■□□□□ 0.12
RFX3P48380 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.81■□□□□ 0.12
RFX3P48380 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.81■□□□□ 0.12
RFX3P48380 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.81■□□□□ 0.12
RFX3P48380 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
RFX3P48380 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.81■□□□□ 0.12
RFX3P48380 AL121894.2-201ENST00000602977 491 ntBASIC15.81■□□□□ 0.12
RFX3P48380 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
RFX3P48380 AC004706.3-202ENST00000621574 984 ntBASIC15.81■□□□□ 0.12
RFX3P48380 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.81■□□□□ 0.12
RFX3P48380 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
RFX3P48380 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
RFX3P48380 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFX3P48380 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.8■□□□□ 0.12
RFX3P48380 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.8■□□□□ 0.12
RFX3P48380 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.8■□□□□ 0.12
RFX3P48380 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.8■□□□□ 0.12
RFX3P48380 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.8■□□□□ 0.12
RFX3P48380 NORAD-201ENST00000565493 5339 ntBASIC15.8■□□□□ 0.12
RFX3P48380 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.8■□□□□ 0.12
RFX3P48380 PTCHD3P3-201ENST00000403073 906 ntBASIC15.8■□□□□ 0.12
RFX3P48380 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
RFX3P48380 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 HNRNPDP1-201ENST00000439535 754 ntBASIC15.8■□□□□ 0.12
RFX3P48380 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.8■□□□□ 0.12
RFX3P48380 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
RFX3P48380 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.8■□□□□ 0.12
RFX3P48380 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.8■□□□□ 0.12
RFX3P48380 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.8■□□□□ 0.12
RFX3P48380 MIR1199-201ENST00000621445 119 ntBASIC15.8■□□□□ 0.12
RFX3P48380 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.8■□□□□ 0.12
RFX3P48380 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.8■□□□□ 0.12
RFX3P48380 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.8■□□□□ 0.12
RFX3P48380 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.8■□□□□ 0.12
RFX3P48380 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFX3P48380 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 RNF216P1-203ENST00000404404 2427 ntBASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms