Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 AC064836.3-201ENST00000607928 673 ntBASIC15.83■□□□□ 0.12
SOX3P41225 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.83■□□□□ 0.12
SOX3P41225 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 FER1L4-210ENST00000615531 5998 ntBASIC15.82■□□□□ 0.12
SOX3P41225 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SOX3P41225 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.82■□□□□ 0.12
SOX3P41225 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
SOX3P41225 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
SOX3P41225 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
SOX3P41225 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.82■□□□□ 0.12
SOX3P41225 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SOX3P41225 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 MRPL20P1-201ENST00000400819 433 ntBASIC15.82■□□□□ 0.12
SOX3P41225 CRYGEP-201ENST00000412192 528 ntBASIC15.82■□□□□ 0.12
SOX3P41225 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.82■□□□□ 0.12
SOX3P41225 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.82■□□□□ 0.12
SOX3P41225 RNA5SP416-201ENST00000516838 111 ntBASIC15.82■□□□□ 0.12
SOX3P41225 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.82■□□□□ 0.12
SOX3P41225 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.82■□□□□ 0.12
SOX3P41225 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.82■□□□□ 0.12
SOX3P41225 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 GGTLC5P-201ENST00000617623 998 ntBASIC15.82■□□□□ 0.12
SOX3P41225 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.82■□□□□ 0.12
SOX3P41225 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.82■□□□□ 0.12
SOX3P41225 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SOX3P41225 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SOX3P41225 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SOX3P41225 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SOX3P41225 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.81■□□□□ 0.12
SOX3P41225 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.81■□□□□ 0.12
SOX3P41225 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
SOX3P41225 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SOX3P41225 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.81■□□□□ 0.12
SOX3P41225 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.81■□□□□ 0.12
SOX3P41225 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
SOX3P41225 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.81■□□□□ 0.12
SOX3P41225 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.81■□□□□ 0.12
SOX3P41225 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.81■□□□□ 0.12
SOX3P41225 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
SOX3P41225 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.81■□□□□ 0.12
SOX3P41225 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.81■□□□□ 0.12
SOX3P41225 AC023511.2-201ENST00000618803 211 ntBASIC15.81■□□□□ 0.12
SOX3P41225 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SOX3P41225 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SOX3P41225 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SOX3P41225 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms