Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 SPDYE11-202ENST00000450699 704 ntBASIC18.82■□□□□ 0.6
CIITAP33076 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 AC079140.1-201ENST00000508039 487 ntBASIC18.82■□□□□ 0.6
CIITAP33076 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.82■□□□□ 0.6
CIITAP33076 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 SPDYE9P-201ENST00000570642 692 ntBASIC18.82■□□□□ 0.6
CIITAP33076 SPDYE10P-202ENST00000612005 668 ntBASIC18.82■□□□□ 0.6
CIITAP33076 SPDYE8P-202ENST00000612377 668 ntBASIC18.82■□□□□ 0.6
CIITAP33076 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.82■□□□□ 0.6
CIITAP33076 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.82■□□□□ 0.6
CIITAP33076 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CIITAP33076 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 LTB4R2-202ENST00000528054 3092 ntBASIC18.82■□□□□ 0.6
CIITAP33076 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CIITAP33076 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.82■□□□□ 0.6
CIITAP33076 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.81■□□□□ 0.6
CIITAP33076 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.81■□□□□ 0.6
CIITAP33076 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.81■□□□□ 0.6
CIITAP33076 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.81■□□□□ 0.6
CIITAP33076 KRT18P34-201ENST00000488218 1270 ntBASIC18.81■□□□□ 0.6
CIITAP33076 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.81■□□□□ 0.6
CIITAP33076 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.81■□□□□ 0.6
CIITAP33076 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.81■□□□□ 0.6
CIITAP33076 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.81■□□□□ 0.6
CIITAP33076 AC084121.4-201ENST00000641598 221 ntBASIC18.81■□□□□ 0.6
CIITAP33076 AF228730.8-201ENST00000642140 221 ntBASIC18.81■□□□□ 0.6
CIITAP33076 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.81■□□□□ 0.6
CIITAP33076 GPAA1P2-202ENST00000606848 1787 ntBASIC18.81■□□□□ 0.6
CIITAP33076 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CIITAP33076 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CIITAP33076 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 CNN2P11-201ENST00000429351 262 ntBASIC18.8■□□□□ 0.6
CIITAP33076 SPCS2P4-201ENST00000436160 681 ntBASIC18.8■□□□□ 0.6
CIITAP33076 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
CIITAP33076 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
CIITAP33076 TIMM8BP1-201ENST00000452384 211 ntBASIC18.8■□□□□ 0.6
CIITAP33076 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CIITAP33076 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.8■□□□□ 0.6
CIITAP33076 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.8■□□□□ 0.6
CIITAP33076 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CIITAP33076 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CIITAP33076 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
CIITAP33076 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
CIITAP33076 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.8■□□□□ 0.6
CIITAP33076 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CIITAP33076 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CIITAP33076 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms