Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.56■□□□□ 0.24
VARSP26640 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VARSP26640 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.56■□□□□ 0.24
VARSP26640 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VARSP26640 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VARSP26640 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VARSP26640 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.55■□□□□ 0.24
VARSP26640 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 FRMD8P1-201ENST00000440433 1524 ntBASIC16.55■□□□□ 0.24
VARSP26640 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VARSP26640 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 RNF216P1-203ENST00000404404 2427 ntBASIC16.55■□□□□ 0.24
VARSP26640 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.55■□□□□ 0.24
VARSP26640 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VARSP26640 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.55■□□□□ 0.24
VARSP26640 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 AC092183.1-201ENST00000469884 875 ntBASIC16.55■□□□□ 0.24
VARSP26640 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.55■□□□□ 0.24
VARSP26640 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.55■□□□□ 0.24
VARSP26640 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
VARSP26640 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.55■□□□□ 0.24
VARSP26640 AL353135.1-201ENST00000606729 504 ntBASIC16.55■□□□□ 0.24
VARSP26640 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.55■□□□□ 0.24
VARSP26640 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.55■□□□□ 0.24
VARSP26640 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
VARSP26640 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VARSP26640 AC078925.2-201ENST00000624013 1973 ntBASIC16.55■□□□□ 0.24
VARSP26640 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
VARSP26640 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 NCF1C-201ENST00000438382 1427 ntBASIC16.54■□□□□ 0.24
VARSP26640 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.54■□□□□ 0.24
VARSP26640 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.54■□□□□ 0.24
VARSP26640 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.54■□□□□ 0.24
VARSP26640 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.54■□□□□ 0.24
VARSP26640 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.54■□□□□ 0.24
VARSP26640 AC018712.1-201ENST00000455767 687 ntBASIC16.54■□□□□ 0.24
VARSP26640 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC16.54■□□□□ 0.24
VARSP26640 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VARSP26640 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.54■□□□□ 0.24
VARSP26640 AC025062.2-201ENST00000605477 670 ntBASIC16.54■□□□□ 0.24
VARSP26640 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.54■□□□□ 0.24
VARSP26640 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.54■□□□□ 0.24
VARSP26640 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
VARSP26640 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
VARSP26640 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
VARSP26640 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VARSP26640 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VARSP26640 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VARSP26640 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.53■□□□□ 0.24
VARSP26640 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VARSP26640 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VARSP26640 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VARSP26640 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VARSP26640 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms