Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.93■□□□□ 0.3
HLA-DPA1P20036 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DPA1P20036 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 SNX33P1-201ENST00000592116 1762 ntBASIC16.92■□□□□ 0.3
HLA-DPA1P20036 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 HCG4B-203ENST00000450128 991 ntBASIC16.92■□□□□ 0.3
HLA-DPA1P20036 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 IL9RP2-201ENST00000423948 1312 ntBASIC16.92■□□□□ 0.3
HLA-DPA1P20036 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HLA-DPA1P20036 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 AC084018.2-201ENST00000613093 2607 ntBASIC16.91■□□□□ 0.3
HLA-DPA1P20036 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 KRT8P39-201ENST00000396270 1433 ntBASIC16.91■□□□□ 0.3
HLA-DPA1P20036 AC104109.2-201ENST00000602919 1418 ntBASIC16.91■□□□□ 0.3
HLA-DPA1P20036 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 IGLL3P-201ENST00000412472 434 ntBASIC16.91■□□□□ 0.3
HLA-DPA1P20036 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.91■□□□□ 0.3
HLA-DPA1P20036 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DPA1P20036 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms